Cow genome map

Conread name: Tra1-TCH01A040030

Conread position: 249-787
Cow position: chr28:14150748-14151275 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 17

Conread position: 252-642
Cow position: chr28:9264847-9265241 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 259
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 51, 11

Conread position: 252-787
Cow position: chr28:16211580-16211048 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 16

Conread position: 253-687
Cow position: chr28:21129613-21129189 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 34

Conread position: 267-706
Cow position: chr28:32300847-32300404 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 296
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 34, 26

Conread position: 267-708
Cow position: chr28:16109478-16109894 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 20

Conread position: 267-786
Cow position: chr28:20124312-20124837 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 198

Conread position: 268-442
Cow position: chr28:11427009-11426836 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 144
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 19, 0

Conread position: 268-638
Cow position: chr28:17599201-17598830 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 251
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 89, 19

Conread position: 268-703
Cow position: chr28:16215370-16214951 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 20

Conread position: 268-706
Cow position: chr28:16182129-16182561 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 17

Conread position: 268-709
Cow position: chr28:18590789-18591226 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 19

Conread position: 268-710
Cow position: chr28:3914236-3914671 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 21

Conread position: 268-725
Cow position: chr28:10534408-10533958 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 19

Conread position: 268-729
Cow position: chr28:24965912-24966366 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 15

Conread position: 268-762
Cow position: chr28:7685149-7684669 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 19

Conread position: 268-786
Cow position: chr28:26614421-26614925 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 19

Conread position: 268-787
Cow position: chr28:3745730-3746255 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 19

Conread position: 268-787
Cow position: chr28:8787087-8787593 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 406, 22

Conread position: 268-791
Cow position: chr28:18354778-18354276 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 355
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 36, 19

Conread position: 269-787
Cow position: chr28:21867978-21868510 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 18

Conread position: 272-706
Cow position: chr28:21844487-21844911 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 15

Conread position: 272-709
Cow position: chr28:25826328-25825910 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 291
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 32, 17

Conread position: 272-719
Cow position: chr28:25070632-25071093 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 15

Conread position: 274-719
Cow position: chr28:18463077-18462642 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 307
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 29, 13

Conread position: 274-728
Cow position: chr28:3144354-3143907 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 13

Conread position: 275-787
Cow position: chr28:7751755-7751248 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 133

Conread position: 279-787
Cow position: chr28:5684241-5684756 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 8

Conread position: 287-642
Cow position: chr28:8911676-8911325 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 177

Conread position: 292-709
Cow position: chr28:25563633-25564040 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 14

Conread position: 298-710
Cow position: chr28:28163654-28164046 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 376, 16

Conread position: 298-787
Cow position: chr28:10977420-10977894 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 165

Conread position: 335-740
Cow position: chr28:14997657-14998055 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 337, 129

Conread position: 355-787
Cow position: chr28:22332163-22332581 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 108

Conread position: 357-729
Cow position: chr28:5904350-5904713 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 107

Conread position: 358-706
Cow position: chr28:4587712-4588054 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 105

Conread position: 359-710
Cow position: chr28:6971722-6971391 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 104

Conread position: 360-787
Cow position: chr28:3024289-3023860 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 19

Conread position: 365-710
Cow position: chr28:12964200-12964527 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 59

Conread position: 370-724
Cow position: chr28:10744833-10745186 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 90

Conread position: 374-706
Cow position: chr28:23480628-23480302 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 230
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 165, 12

Conread position: 380-785
Cow position: chr28:16919523-16919117 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 83

Conread position: 393-709
Cow position: chr28:23231414-23231106 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 222
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 146, 67

Conread position: 401-787
Cow position: chr28:7549403-7549005 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 62

Conread position: 406-709
Cow position: chr28:23675812-23676097 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 220
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 133, 54

Conread position: 412-709
Cow position: chr28:7590513-7590222 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 214
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 97, 44

Conread position: 460-710
Cow position: chr28:25596343-25596586 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 127

Conread position: 499-710
Cow position: chr28:5203953-5204152 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 162
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 39, 26

Conread position: 499-710
Cow position: chr28:15063588-15063381 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 164
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 40, 20

Conread position: 499-714
Cow position: chr28:21873523-21873734 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 159
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 41, 105

Conread position: 499-716
Cow position: chr28:2905331-2905541 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 103

Conread position: 499-718
Cow position: chr28:15688792-15689008 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 159
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 40, 20

Conread position: 499-719
Cow position: chr28:2862612-2862834 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 0

Conread position: 499-719
Cow position: chr28:26533293-26533518 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 170
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 41, 0

Conread position: 499-785
Cow position: chr28:1099891-1099613 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 202
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 40, 103

Conread position: 499-786
Cow position: chr28:3408466-3408166 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 11

Conread position: 500-710
Cow position: chr28:8022359-8022150 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 67

Conread position: 500-710
Cow position: chr28:23621300-23621504 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 156
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 39, 19

Conread position: 500-787
Cow position: chr28:33884161-33884455 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 216
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 44, 60

Conread position: 502-709
Cow position: chr28:9285623-9285415 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 6

Conread position: 508-710
Cow position: chr28:5128967-5128772 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 160
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 19, 0

Conread position: 508-728
Cow position: chr28:11423044-11422836 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 169
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 31, 37

Conread position: 508-738
Cow position: chr28:8348893-8348658 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 104

Conread position: 509-787
Cow position: chr28:9636696-9636404 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 169

Conread position: 513-703
Cow position: chr28:34430662-34430469 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 143
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 26, 0

Conread position: 513-709
Cow position: chr28:5658319-5658510 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 159
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 25, 6

Conread position: 513-711
Cow position: chr28:15044090-15043903 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 158
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 25, 41

Conread position: 514-785
Cow position: chr28:11884757-11884470 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 64

Conread position: 515-728
Cow position: chr28:23775812-23776024 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 148

Conread position: 515-786
Cow position: chr28:16204567-16204282 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 519-702
Cow position: chr28:14508595-14508417 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 139
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 21, 77

Conread position: 519-703
Cow position: chr28:9099705-9099887 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 148
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 20, 108

Conread position: 520-697
Cow position: chr28:17362807-17362642 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 134
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 19, 34

Conread position: 520-710
Cow position: chr28:33163696-33163504 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 155
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 19, 0

Conread position: 522-709
Cow position: chr28:12987174-12987366 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 137
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 66, 20

Conread position: 523-787
Cow position: chr28:4016304-4016584 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 213
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 58, 23

Conread position: 528-731
Cow position: chr28:5188622-5188425 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 156
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 11, 68

Conread position: 530-787
Cow position: chr28:2738030-2737753 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 210
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 9, 0

Conread position: 533-710
Cow position: chr28:4884481-4884304 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 141
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 538-709
Cow position: chr28:5437301-5437129 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 136
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 135, 0

Conread position: 544-787
Cow position: chr28:4090248-4090005 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 175
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 130, 51

Conread position: 548-687
Cow position: chr28:18186345-18186491 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 549-787
Cow position: chr28:4158753-4159008 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 180
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 35, 0

Conread position: 550-787
Cow position: chr28:4809596-4809832 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 110

Conread position: 561-776
Cow position: chr28:11829129-11828917 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 167
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 26, 122

Conread position: 562-709
Cow position: chr28:19023947-19024099 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 53, 0

Conread position: 562-787
Cow position: chr28:3000780-3000555 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 169
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 150, 43

Conread position: 564-788
Cow position: chr28:9684504-9684280 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 164
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 129, 96

Conread position: 582-719
Cow position: chr28:657618-657484 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 113
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 5, 12

Conread position: 593-719
Cow position: chr28:2872758-2872885 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 10, 98

Conread position: 598-723
Cow position: chr28:7608133-7608007 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 76, 0

Show alignments to all cow chromosomes.