Cow genome map
| Conread name: | Tra1-TCH01A040030 |
| Conread position: | 252-719 |
| Cow position: | chr29:11684506-11684969 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 14 |
| Conread position: | 259-708 |
| Cow position: | chr29:6925529-6925963 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 9 |
| Conread position: | 267-430 |
| Cow position: | chr29:32176008-32176166 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 37, 19 |
| Conread position: | 267-457 |
| Cow position: | chr29:24730758-24730576 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 267-786 |
| Cow position: | chr29:24578371-24578908 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 20 |
| Conread position: | 268-387 |
| Cow position: | chr29:34429884-34430003 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 36, 18 |
| Conread position: | 268-399 |
| Cow position: | chr29:10236907-10236777 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 31, 18 |
| Conread position: | 268-702 |
| Cow position: | chr29:18072447-18072880 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 304 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 36, 21 |
| Conread position: | 268-706 |
| Cow position: | chr29:19619517-19619085 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 20 |
| Conread position: | 268-709 |
| Cow position: | chr29:87493-87064 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 19 |
| Conread position: | 268-742 |
| Cow position: | chr29:15738826-15738357 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 19 |
| Conread position: | 268-787 |
| Cow position: | chr29:11136368-11135850 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 20 |
| Conread position: | 268-787 |
| Cow position: | chr29:13616135-13615603 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 19 |
| Conread position: | 268-787 |
| Cow position: | chr29:18085094-18085618 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 20 |
| Conread position: | 272-570 |
| Cow position: | chr29:5187260-5186971 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 15 |
| Conread position: | 273-706 |
| Cow position: | chr29:4875381-4874939 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 14 |
| Conread position: | 315-710 |
| Cow position: | chr29:17606982-17607368 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 158 |
| Conread position: | 327-719 |
| Cow position: | chr29:21197072-21196690 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 145 |
| Conread position: | 328-787 |
| Cow position: | chr29:17109551-17110003 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 119 |
| Conread position: | 350-787 |
| Cow position: | chr29:35502045-35501608 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 116 |
| Conread position: | 356-787 |
| Cow position: | chr29:19124967-19125368 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 11 |
| Conread position: | 363-710 |
| Cow position: | chr29:26616122-26615769 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 242 |
| Conread position: | 399-685 |
| Cow position: | chr29:40903069-40902794 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 208 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 139, 74 |
| Conread position: | 409-787 |
| Cow position: | chr29:9709359-9709741 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 280 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 130, 53 |
| Conread position: | 482-719 |
| Cow position: | chr29:4625266-4625035 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 56, 91 |
| Conread position: | 493-787 |
| Cow position: | chr29:20903552-20903244 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 155 |
| Conread position: | 494-705 |
| Cow position: | chr29:12451111-12451324 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 46, 25 |
| Conread position: | 496-736 |
| Cow position: | chr29:29312774-29312535 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 43, 75 |
| Conread position: | 499-701 |
| Cow position: | chr29:94801-94610 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 145, 33 |
| Conread position: | 499-709 |
| Cow position: | chr29:18021931-18021729 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 40, 68 |
| Conread position: | 499-709 |
| Cow position: | chr29:34736721-34736516 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 39, 20 |
| Conread position: | 499-710 |
| Cow position: | chr29:7408145-7407935 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 40, 146 |
| Conread position: | 499-718 |
| Cow position: | chr29:13372407-13372626 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 40, 99 |
| Conread position: | 499-737 |
| Cow position: | chr29:14501338-14501571 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 40, 29 |
| Conread position: | 499-787 |
| Cow position: | chr29:26673159-26672865 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 40, 20 |
| Conread position: | 501-716 |
| Cow position: | chr29:39111562-39111355 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 67 |
| Conread position: | 501-787 |
| Cow position: | chr29:12679901-12680202 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 18 |
| Conread position: | 503-771 |
| Cow position: | chr29:21000389-21000661 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 59 |
| Conread position: | 508-728 |
| Cow position: | chr29:1556685-1556902 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 31, 94 |
| Conread position: | 513-709 |
| Cow position: | chr29:11915574-11915772 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 25, 139 |
| Conread position: | 513-723 |
| Cow position: | chr29:11562372-11562579 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 104 |
| Conread position: | 514-718 |
| Cow position: | chr29:32655666-32655472 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 73, 120 |
| Conread position: | 518-697 |
| Cow position: | chr29:26984990-26985168 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 14, 40 |
| Conread position: | 519-706 |
| Cow position: | chr29:19949073-19949250 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 20, 122 |
| Conread position: | 519-706 |
| Cow position: | chr29:34773964-34773785 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 20, 53 |
| Conread position: | 519-719 |
| Cow position: | chr29:22714964-22714762 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 160 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 520-710 |
| Cow position: | chr29:24103784-24103593 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 160 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 185 |
| Conread position: | 520-728 |
| Cow position: | chr29:6472080-6472286 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 18, 66 |
| Conread position: | 522-791 |
| Cow position: | chr29:19254056-19253779 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 17, 74 |
| Conread position: | 530-679 |
| Cow position: | chr29:3711161-3711306 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 9, 82 |
| Conread position: | 537-718 |
| Cow position: | chr29:463871-463697 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 537-787 |
| Cow position: | chr29:23155033-23155272 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 539-709 |
| Cow position: | chr29:2532846-2533011 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 541-787 |
| Cow position: | chr29:44682304-44682058 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 133, 33 |
| Conread position: | 546-781 |
| Cow position: | chr29:709331-709093 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 98, 38 |
| Conread position: | 549-787 |
| Cow position: | chr29:39329801-39329557 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 125, 6 |
| Conread position: | 549-791 |
| Cow position: | chr29:36209959-36210197 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 175, 48 |
| Conread position: | 555-702 |
| Cow position: | chr29:9718972-9718825 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 555-719 |
| Cow position: | chr29:25091910-25092073 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 119, 12 |
| Conread position: | 555-787 |
| Cow position: | chr29:3100461-3100221 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 88, 205 |
| Conread position: | 555-787 |
| Cow position: | chr29:10818636-10818404 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 563-776 |
| Cow position: | chr29:32211251-32211032 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 111, 127 |
| Conread position: | 564-719 |
| Cow position: | chr29:5186689-5186535 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 111, 87 |
| Conread position: | 574-787 |
| Cow position: | chr29:23244064-23243832 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 598-786 |
| Cow position: | chr29:1124495-1124700 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 76, 0 |
Show alignments to all cow chromosomes.