Cow genome map


           Conread name:
           Tra1-TCH01A040030
        

               Conread position:
               249-737
               

               Cow position:
               
               

               Alignm length:
               494
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 19
               

               Conread position:
               252-703
               

               Cow position:
               
               

               Alignm length:
               458
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 14
               

               Conread position:
               254-441
               

               Cow position:
               
               

               Alignm length:
               188
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               266-461
               

               Cow position:
               
               

               Alignm length:
               197
               

               Alignm identity:
               153
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               38, 22
               

               Conread position:
               267-461
               

               Cow position:
               
               

               Alignm length:
               196
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               30, 19
               

               Conread position:
               267-710
               

               Cow position:
               
               

               Alignm length:
               448
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 20
               

               Conread position:
               267-787
               

               Cow position:
               
               

               Alignm length:
               529
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 20
               

               Conread position:
               268-395
               

               Cow position:
               
               

               Alignm length:
               129
               

               Alignm identity:
               102
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               29, 18
               

               Conread position:
               268-461
               

               Cow position:
               
               

               Alignm length:
               195
               

               Alignm identity:
               140
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               29, 17
               

               Conread position:
               268-462
               

               Cow position:
               
               

               Alignm length:
               196
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               191, 103
               

               Conread position:
               268-593
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               223
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               31, 18
               

               Conread position:
               268-701
               

               Cow position:
               
               

               Alignm length:
               439
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 17
               

               Conread position:
               268-703
               

               Cow position:
               
               

               Alignm length:
               440
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 19
               

               Conread position:
               268-704
               

               Cow position:
               
               

               Alignm length:
               441
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 18
               

               Conread position:
               268-706
               

               Cow position:
               
               

               Alignm length:
               443
               

               Alignm identity:
               289
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               29, 17
               

               Conread position:
               268-709
               

               Cow position:
               
               

               Alignm length:
               446
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               271, 48
               

               Conread position:
               268-709
               

               Cow position:
               
               

               Alignm length:
               448
               

               Alignm identity:
               293
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               36, 19
               

               Conread position:
               268-710
               

               Cow position:
               
               

               Alignm length:
               466
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 19
               

               Conread position:
               268-713
               

               Cow position:
               
               

               Alignm length:
               475
               

               Alignm identity:
               308
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               14, 20
               

               Conread position:
               268-715
               

               Cow position:
               
               

               Alignm length:
               452
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 18
               

               Conread position:
               268-729
               

               Cow position:
               
               

               Alignm length:
               469
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 21
               

               Conread position:
               268-740
               

               Cow position:
               
               

               Alignm length:
               480
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 19
               

               Conread position:
               268-750
               

               Cow position:
               
               

               Alignm length:
               493
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 19
               

               Conread position:
               268-782
               

               Cow position:
               
               

               Alignm length:
               529
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               232, 19
               

               Conread position:
               268-786
               

               Cow position:
               
               

               Alignm length:
               556
               

               Alignm identity:
               392
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 19
               

               Conread position:
               268-787
               

               Cow position:
               
               

               Alignm length:
               545
               

               Alignm identity:
               392
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 19
               

               Conread position:
               269-717
               

               Cow position:
               
               

               Alignm length:
               453
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 17
               

               Conread position:
               272-649
               

               Cow position:
               
               

               Alignm length:
               381
               

               Alignm identity:
               260
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               26, 16
               

               Conread position:
               272-706
               

               Cow position:
               
               

               Alignm length:
               437
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               266, 15
               

               Conread position:
               273-719
               

               Cow position:
               
               

               Alignm length:
               453
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 193
               

               Conread position:
               273-787
               

               Cow position:
               
               

               Alignm length:
               533
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 14
               

               Conread position:
               275-719
               

               Cow position:
               
               

               Alignm length:
               458
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 12
               

               Conread position:
               279-730
               

               Cow position:
               
               

               Alignm length:
               462
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 9
               

               Conread position:
               285-709
               

               Cow position:
               
               

               Alignm length:
               427
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 157
               

               Conread position:
               287-710
               

               Cow position:
               
               

               Alignm length:
               427
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 187
               

               Conread position:
               287-710
               

               Cow position:
               
               

               Alignm length:
               428
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               252, 77
               

               Conread position:
               287-768
               

               Cow position:
               
               

               Alignm length:
               488
               

               Alignm identity:
               320
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               12, 23
               

               Conread position:
               297-729
               

               Cow position:
               
               

               Alignm length:
               440
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 167
               

               Conread position:
               299-787
               

               Cow position:
               
               

               Alignm length:
               503
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               159, 230
               

               Conread position:
               318-786
               

               Cow position:
               
               

               Alignm length:
               476
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               221, 47
               

               Conread position:
               327-709
               

               Cow position:
               
               

               Alignm length:
               394
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 142
               

               Conread position:
               353-787
               

               Cow position:
               
               

               Alignm length:
               466
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 36
               

               Conread position:
               357-737
               

               Cow position:
               
               

               Alignm length:
               391
               

               Alignm identity:
               274
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               182, 106
               

               Conread position:
               359-776
               

               Cow position:
               
               

               Alignm length:
               428
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 93
               

               Conread position:
               360-700
               

               Cow position:
               
               

               Alignm length:
               345
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 115
               

               Conread position:
               361-787
               

               Cow position:
               
               

               Alignm length:
               445
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 102
               

               Conread position:
               374-706
               

               Cow position:
               
               

               Alignm length:
               353
               

               Alignm identity:
               245
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               84, 159
               

               Conread position:
               404-719
               

               Cow position:
               
               

               Alignm length:
               322
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               137, 72
               

               Conread position:
               412-787
               

               Cow position:
               
               

               Alignm length:
               401
               

               Alignm identity:
               264
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               95, 51
               

               Conread position:
               468-719
               

               Cow position:
               
               

               Alignm length:
               258
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               21, 60
               

               Conread position:
               487-710
               

               Cow position:
               
               

               Alignm length:
               230
               

               Alignm identity:
               180
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               5, 143
               

               Conread position:
               496-710
               

               Cow position:
               
               

               Alignm length:
               216
               

               Alignm identity:
               164
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               178, 23
               

               Conread position:
               499-704
               

               Cow position:
               
               

               Alignm length:
               207
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               35, 89
               

               Conread position:
               499-706
               

               Cow position:
               
               

               Alignm length:
               209
               

               Alignm identity:
               164
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               40, 81
               

               Conread position:
               499-709
               

               Cow position:
               
               

               Alignm length:
               212
               

               Alignm identity:
               152
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               39, 19
               

               Conread position:
               499-709
               

               Cow position:
               
               

               Alignm length:
               213
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               40, 89
               

               Conread position:
               499-709
               

               Cow position:
               
               

               Alignm length:
               216
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               40, 20
               

               Conread position:
               499-709
               

               Cow position:
               
               

               Alignm length:
               212
               

               Alignm identity:
               166
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               40, 96
               

               Conread position:
               499-710
               

               Cow position:
               
               

               Alignm length:
               213
               

               Alignm identity:
               173
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               175, 44
               

               Conread position:
               499-710
               

               Cow position:
               
               

               Alignm length:
               215
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               28, 99
               

               Conread position:
               499-710
               

               Cow position:
               
               

               Alignm length:
               214
               

               Alignm identity:
               171
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               40, 20
               

               Conread position:
               499-718
               

               Cow position:
               
               

               Alignm length:
               230
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               499-722
               

               Cow position:
               
               

               Alignm length:
               226
               

               Alignm identity:
               183
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 30
               

               Conread position:
               499-726
               

               Cow position:
               
               

               Alignm length:
               231
               

               Alignm identity:
               181
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               39, 20
               

               Conread position:
               499-781
               

               Cow position:
               
               

               Alignm length:
               286
               

               Alignm identity:
               187
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               147, 20
               

               Conread position:
               499-787
               

               Cow position:
               
               

               Alignm length:
               293
               

               Alignm identity:
               220
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               22, 9
               

               Conread position:
               499-787
               

               Cow position:
               
               

               Alignm length:
               302
               

               Alignm identity:
               226
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               40, 20
               

               Conread position:
               499-787
               

               Cow position:
               
               

               Alignm length:
               297
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 173
               

               Conread position:
               499-787
               

               Cow position:
               
               

               Alignm length:
               293
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 202
               

               Conread position:
               499-787
               

               Cow position:
               
               

               Alignm length:
               301
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 91
               

               Conread position:
               499-787
               

               Cow position:
               
               

               Alignm length:
               307
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 104
               

               Conread position:
               500-710
               

               Cow position:
               
               

               Alignm length:
               212
               

               Alignm identity:
               168
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               39, 170
               

               Conread position:
               500-791
               

               Cow position:
               
               

               Alignm length:
               308
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 163
               

               Conread position:
               501-710
               

               Cow position:
               
               

               Alignm length:
               212
               

               Alignm identity:
               164
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               38, 97
               

               Conread position:
               501-787
               

               Cow position:
               
               

               Alignm length:
               299
               

               Alignm identity:
               218
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               38, 18
               

               Conread position:
               502-706
               

               Cow position:
               
               

               Alignm length:
               206
               

               Alignm identity:
               153
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               37, 145
               

               Conread position:
               507-675
               

               Cow position:
               
               

               Alignm length:
               171
               

               Alignm identity:
               135
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               509-705
               

               Cow position:
               
               

               Alignm length:
               199
               

               Alignm identity:
               150
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               142, 10
               

               Conread position:
               514-787
               

               Cow position:
               
               

               Alignm length:
               288
               

               Alignm identity:
               198
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               25, 93
               

               Conread position:
               515-709
               

               Cow position:
               
               

               Alignm length:
               197
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               72, 122
               

               Conread position:
               515-710
               

               Cow position:
               
               

               Alignm length:
               202
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               24, 82
               

               Conread position:
               515-787
               

               Cow position:
               
               

               Alignm length:
               278
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               24, 79
               

               Conread position:
               518-677
               

               Cow position:
               
               

               Alignm length:
               162
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               21, 45
               

               Conread position:
               519-729
               

               Cow position:
               
               

               Alignm length:
               215
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               20, 77
               

               Conread position:
               520-710
               

               Cow position:
               
               

               Alignm length:
               193
               

               Alignm identity:
               143
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               522-709
               

               Cow position:
               
               

               Alignm length:
               189
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               17, 131
               

               Conread position:
               526-710
               

               Cow position:
               
               

               Alignm length:
               187
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               537-786
               

               Cow position:
               
               

               Alignm length:
               269
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 64
               

               Conread position:
               539-701
               

               Cow position:
               
               

               Alignm length:
               165
               

               Alignm identity:
               127
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               16, 78
               

               Conread position:
               542-712
               

               Cow position:
               
               

               Alignm length:
               172
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               132, 53
               

               Conread position:
               544-709
               

               Cow position:
               
               

               Alignm length:
               167
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               130, 40
               

               Conread position:
               546-786
               

               Cow position:
               
               

               Alignm length:
               260
               

               Alignm identity:
               194
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               127, 0
               

               Conread position:
               554-789
               

               Cow position:
               
               

               Alignm length:
               257
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               120, 90
               

               Conread position:
               558-710
               

               Cow position:
               
               

               Alignm length:
               155
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               116, 22
               

               Conread position:
               560-786
               

               Cow position:
               
               

               Alignm length:
               246
               

               Alignm identity:
               181
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               114, 0
               

               Conread position:
               569-685
               

               Cow position:
               
               

               Alignm length:
               117
               

               Alignm identity:
               92
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               589-787
               

               Cow position:
               
               

               Alignm length:
               202
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               117, 80
               
Show alignments to all cow chromosomes.