Cow genome map

Conread name: Tra1-TCH01A040030

Conread position: 249-717
Cow position:
Alignm length: 475
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 17

Conread position: 254-444
Cow position:
Alignm length: 193
Alignm identity: 142
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 8, 35

Conread position: 254-781
Cow position:
Alignm length: 554
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 16

Conread position: 267-705
Cow position:
Alignm length: 448
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 20

Conread position: 267-709
Cow position:
Alignm length: 445
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 18

Conread position: 267-709
Cow position:
Alignm length: 446
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 18

Conread position: 267-710
Cow position:
Alignm length: 447
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 20

Conread position: 267-787
Cow position:
Alignm length: 551
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 20

Conread position: 267-787
Cow position:
Alignm length: 530
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 19

Conread position: 268-661
Cow position:
Alignm length: 399
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 189

Conread position: 268-675
Cow position:
Alignm length: 411
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 16

Conread position: 268-696
Cow position:
Alignm length: 431
Alignm identity: 255
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 27, 18

Conread position: 268-696
Cow position:
Alignm length: 444
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 21

Conread position: 268-710
Cow position:
Alignm length: 447
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 19

Conread position: 268-719
Cow position:
Alignm length: 458
Alignm identity: 305
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 37, 21

Conread position: 268-722
Cow position:
Alignm length: 459
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 19

Conread position: 268-772
Cow position:
Alignm length: 538
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 18

Conread position: 268-775
Cow position:
Alignm length: 515
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 19

Conread position: 268-787
Cow position:
Alignm length: 527
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 16

Conread position: 268-787
Cow position:
Alignm length: 530
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 19

Conread position: 268-787
Cow position:
Alignm length: 555
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 19

Conread position: 268-787
Cow position:
Alignm length: 534
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 21

Conread position: 268-787
Cow position:
Alignm length: 539
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 19

Conread position: 268-788
Cow position:
Alignm length: 527
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 19

Conread position: 272-710
Cow position:
Alignm length: 443
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 15

Conread position: 272-710
Cow position:
Alignm length: 442
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 15

Conread position: 272-787
Cow position:
Alignm length: 540
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 17

Conread position: 272-787
Cow position:
Alignm length: 538
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 15

Conread position: 273-709
Cow position:
Alignm length: 454
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 13

Conread position: 285-709
Cow position:
Alignm length: 430
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 189

Conread position: 288-717
Cow position:
Alignm length: 434
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 27

Conread position: 293-716
Cow position:
Alignm length: 433
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 170

Conread position: 293-787
Cow position:
Alignm length: 511
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 171

Conread position: 298-709
Cow position:
Alignm length: 418
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 94

Conread position: 319-728
Cow position:
Alignm length: 416
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 144

Conread position: 321-759
Cow position:
Alignm length: 449
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 58

Conread position: 322-786
Cow position:
Alignm length: 478
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 141

Conread position: 331-787
Cow position:
Alignm length: 476
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 135

Conread position: 331-787
Cow position:
Alignm length: 471
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 132

Conread position: 333-787
Cow position:
Alignm length: 457
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 130

Conread position: 365-709
Cow position:
Alignm length: 351
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 96

Conread position: 367-703
Cow position:
Alignm length: 339
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 85

Conread position: 379-785
Cow position:
Alignm length: 429
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 90

Conread position: 380-787
Cow position:
Alignm length: 425
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 82

Conread position: 385-709
Cow position:
Alignm length: 345
Alignm identity: 239
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 5, 149

Conread position: 386-687
Cow position:
Alignm length: 322
Alignm identity: 228
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 135, 77

Conread position: 388-789
Cow position:
Alignm length: 419
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 75

Conread position: 407-719
Cow position:
Alignm length: 314
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 56

Conread position: 412-687
Cow position:
Alignm length: 278
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 51

Conread position: 423-703
Cow position:
Alignm length: 282
Alignm identity: 206
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 116, 40

Conread position: 440-787
Cow position:
Alignm length: 362
Alignm identity: 260
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 99, 23

Conread position: 459-715
Cow position:
Alignm length: 263
Alignm identity: 194
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 30, 118

Conread position: 468-717
Cow position:
Alignm length: 251
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 21

Conread position: 496-787
Cow position:
Alignm length: 313
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 169

Conread position: 499-690
Cow position:
Alignm length: 195
Alignm identity: 164
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 499-705
Cow position:
Alignm length: 210
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 17

Conread position: 499-709
Cow position:
Alignm length: 213
Alignm identity: 159
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 40, 94

Conread position: 499-709
Cow position:
Alignm length: 220
Alignm identity: 153
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 38, 90

Conread position: 499-709
Cow position:
Alignm length: 212
Alignm identity: 153
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 175, 20

Conread position: 499-709
Cow position:
Alignm length: 214
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 100

Conread position: 499-709
Cow position:
Alignm length: 216
Alignm identity: 154
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 40, 49

Conread position: 499-709
Cow position:
Alignm length: 218
Alignm identity: 157
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 40, 20

Conread position: 499-710
Cow position:
Alignm length: 214
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 94

Conread position: 499-710
Cow position:
Alignm length: 215
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 499-710
Cow position:
Alignm length: 216
Alignm identity: 171
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 24, 102

Conread position: 499-710
Cow position:
Alignm length: 214
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 154

Conread position: 499-718
Cow position:
Alignm length: 222
Alignm identity: 167
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 78, 20

Conread position: 499-719
Cow position:
Alignm length: 227
Alignm identity: 161
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 34, 0

Conread position: 499-728
Cow position:
Alignm length: 234
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 20

Conread position: 499-728
Cow position:
Alignm length: 232
Alignm identity: 172
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 40, 156

Conread position: 499-729
Cow position:
Alignm length: 232
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 0

Conread position: 499-787
Cow position:
Alignm length: 294
Alignm identity: 218
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 186, 26

Conread position: 499-787
Cow position:
Alignm length: 308
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 89

Conread position: 499-787
Cow position:
Alignm length: 299
Alignm identity: 214
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 40, 20

Conread position: 499-791
Cow position:
Alignm length: 312
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 18

Conread position: 501-706
Cow position:
Alignm length: 207
Alignm identity: 158
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 146, 28

Conread position: 501-787
Cow position:
Alignm length: 293
Alignm identity: 205
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 38, 18

Conread position: 503-710
Cow position:
Alignm length: 210
Alignm identity: 162
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 35, 116

Conread position: 508-709
Cow position:
Alignm length: 208
Alignm identity: 163
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 31, 157

Conread position: 508-787
Cow position:
Alignm length: 288
Alignm identity: 206
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 31, 136

Conread position: 510-728
Cow position:
Alignm length: 221
Alignm identity: 160
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 29, 43

Conread position: 510-776
Cow position:
Alignm length: 292
Alignm identity: 211
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 30, 211

Conread position: 513-787
Cow position:
Alignm length: 287
Alignm identity: 209
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 26, 89

Conread position: 514-710
Cow position:
Alignm length: 199
Alignm identity: 156
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 24, 80

Conread position: 514-776
Cow position:
Alignm length: 270
Alignm identity: 182
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 20, 80

Conread position: 517-736
Cow position:
Alignm length: 225
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 51

Conread position: 519-719
Cow position:
Alignm length: 202
Alignm identity: 166
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 66

Conread position: 522-710
Cow position:
Alignm length: 191
Alignm identity: 154
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 17, 67

Conread position: 522-789
Cow position:
Alignm length: 279
Alignm identity: 200
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 17, 241

Conread position: 523-735
Cow position:
Alignm length: 220
Alignm identity: 170
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 16, 79

Conread position: 523-787
Cow position:
Alignm length: 267
Alignm identity: 199
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 15, 156

Conread position: 529-787
Cow position:
Alignm length: 277
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 27

Conread position: 535-709
Cow position:
Alignm length: 177
Alignm identity: 132
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 128, 112

Conread position: 537-710
Cow position:
Alignm length: 175
Alignm identity: 142
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 137, 0

Conread position: 537-719
Cow position:
Alignm length: 184
Alignm identity: 143
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 140, 65

Conread position: 538-709
Cow position:
Alignm length: 173
Alignm identity: 133
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 102, 0

Conread position: 539-788
Cow position:
Alignm length: 257
Alignm identity: 187
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 66, 0

Conread position: 542-710
Cow position:
Alignm length: 170
Alignm identity: 122
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 132, 63

Conread position: 547-787
Cow position:
Alignm length: 262
Alignm identity: 194
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 126, 0

Conread position: 552-720
Cow position:
Alignm length: 170
Alignm identity: 138
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 122, 24

Conread position: 558-787
Cow position:
Alignm length: 242
Alignm identity: 182
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 116, 64

Conread position: 559-710
Cow position:
Alignm length: 156
Alignm identity: 114
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 86, 96

Conread position: 560-718
Cow position:
Alignm length: 159
Alignm identity: 121
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 109, 0

Conread position: 562-723
Cow position:
Alignm length: 162
Alignm identity: 126
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 111, 0

Conread position: 575-779
Cow position:
Alignm length: 221
Alignm identity: 161
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 132, 102

Conread position: 576-710
Cow position:
Alignm length: 137
Alignm identity: 113
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 98, 55

Conread position: 582-702
Cow position:
Alignm length: 124
Alignm identity: 99
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 582-719
Cow position:
Alignm length: 138
Alignm identity: 106
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 90, 0

Conread position: 591-787
Cow position:
Alignm length: 200
Alignm identity: 145
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 83, 100

Conread position: 593-787
Cow position:
Alignm length: 206
Alignm identity: 148
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 81, 89

Conread position: 597-785
Cow position:
Alignm length: 202
Alignm identity: 151
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 77, 0

Conread position: 600-787
Cow position:
Alignm length: 208
Alignm identity: 158
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 74, 47

Conread position: 611-719
Cow position:
Alignm length: 109
Alignm identity: 91
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 77, 0

Conread position: 618-722
Cow position:
Alignm length: 107
Alignm identity: 88
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 56, 0

Conread position: 659-787
Cow position:
Alignm length: 136
Alignm identity: 106
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 15, 0

Show alignments to all cow chromosomes.