Cow genome map

Conread name: Tra1-TCH01A040030

Conread position: 252-685
Cow position: chr9:25969871-25969442 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 18

Conread position: 267-576
Cow position: chr9:26115342-26115641 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 219
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 26, 19

Conread position: 267-718
Cow position: chr9:20318076-20318509 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 20

Conread position: 268-463
Cow position: chr9:15006268-15006469 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 149
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 31, 18

Conread position: 268-471
Cow position: chr9:20091784-20091583 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 158
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 33, 18

Conread position: 268-498
Cow position: chr9:53531331-53531567 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 165
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 32, 18

Conread position: 268-609
Cow position: chr9:25239888-25239556 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 235
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 35, 17

Conread position: 268-642
Cow position: chr9:64011596-64011227 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 17

Conread position: 268-675
Cow position: chr9:53110029-53109642 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 19

Conread position: 268-706
Cow position: chr9:14003615-14004048 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 19

Conread position: 268-709
Cow position: chr9:3807231-3807665 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 19

Conread position: 268-709
Cow position: chr9:59507580-59507168 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 19

Conread position: 268-710
Cow position: chr9:8951417-8950981 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 303
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 38, 19

Conread position: 268-710
Cow position: chr9:11299182-11299616 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 21

Conread position: 268-710
Cow position: chr9:22361522-22361090 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 19

Conread position: 268-710
Cow position: chr9:29007076-29006637 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 20

Conread position: 268-718
Cow position: chr9:28773627-28773188 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 19

Conread position: 268-718
Cow position: chr9:34310551-34310093 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 20

Conread position: 268-728
Cow position: chr9:64014232-64013774 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 17

Conread position: 268-728
Cow position: chr9:64017579-64017107 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 17

Conread position: 268-776
Cow position: chr9:22440004-22440490 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 19

Conread position: 268-787
Cow position: chr9:46316280-46316801 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 19

Conread position: 269-481
Cow position: chr9:12566868-12566653 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 87, 18

Conread position: 269-703
Cow position: chr9:39971541-39971126 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 17

Conread position: 272-787
Cow position: chr9:33823614-33823099 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 17

Conread position: 273-706
Cow position: chr9:8600868-8600407 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 17

Conread position: 273-710
Cow position: chr9:9200219-9200648 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 14

Conread position: 273-710
Cow position: chr9:53607890-53608320 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 14

Conread position: 273-719
Cow position: chr9:18110359-18110802 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 307
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 28, 14

Conread position: 273-787
Cow position: chr9:5161565-5162069 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 16

Conread position: 275-719
Cow position: chr9:23388177-23388611 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 12

Conread position: 287-787
Cow position: chr9:61023099-61022604 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 123

Conread position: 288-716
Cow position: chr9:648263-647845 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 136

Conread position: 290-787
Cow position: chr9:64344541-64345016 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 337
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 14, 100

Conread position: 298-709
Cow position: chr9:32265908-32266321 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 292
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 59, 170

Conread position: 298-784
Cow position: chr9:6191985-6192475 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 151

Conread position: 301-783
Cow position: chr9:31078608-31079097 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 38

Conread position: 311-709
Cow position: chr9:44108361-44108754 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 176
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 228, 195

Conread position: 322-719
Cow position: chr9:14185147-14184729 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 279
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 32, 26

Conread position: 323-719
Cow position: chr9:44831602-44831987 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 141

Conread position: 324-729
Cow position: chr9:56773538-56773136 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 160

Conread position: 332-719
Cow position: chr9:20810622-20810998 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 131

Conread position: 332-776
Cow position: chr9:9516326-9516774 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 138

Conread position: 332-784
Cow position: chr9:58451662-58452094 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 135

Conread position: 337-719
Cow position: chr9:20848377-20847997 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 120

Conread position: 338-786
Cow position: chr9:8637093-8636649 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 30

Conread position: 349-706
Cow position: chr9:18381289-18380941 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 114

Conread position: 358-711
Cow position: chr9:3594110-3594457 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 97

Conread position: 360-702
Cow position: chr9:62400372-62400043 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 96

Conread position: 387-710
Cow position: chr9:13205183-13205491 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 14

Conread position: 387-724
Cow position: chr9:34957662-34957993 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 76

Conread position: 405-787
Cow position: chr9:5763258-5763650 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 58

Conread position: 478-710
Cow position: chr9:16745983-16745750 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 180
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 30, 24

Conread position: 482-788
Cow position: chr9:18343024-18342713 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 215
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 7, 52

Conread position: 499-706
Cow position: chr9:41513903-41513702 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 157
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 40, 99

Conread position: 499-709
Cow position: chr9:22227801-22228007 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 161
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 22, 91

Conread position: 499-709
Cow position: chr9:36067189-36066984 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 158
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 41, 20

Conread position: 499-710
Cow position: chr9:5226881-5227096 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 20

Conread position: 499-710
Cow position: chr9:49404038-49403834 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 168
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 21, 86

Conread position: 499-729
Cow position: chr9:5327535-5327312 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 171
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 40, 20

Conread position: 499-729
Cow position: chr9:64516813-64517045 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 173
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 39, 20

Conread position: 499-787
Cow position: chr9:10118379-10118678 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 220
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 28, 105

Conread position: 499-787
Cow position: chr9:51205005-51204708 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 29

Conread position: 499-787
Cow position: chr9:52578249-52578557 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 0

Conread position: 499-787
Cow position: chr9:57896841-57897129 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 90

Conread position: 500-706
Cow position: chr9:30020261-30020047 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 39, 19

Conread position: 502-709
Cow position: chr9:29825310-29825112 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 159
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 170, 17

Conread position: 508-672
Cow position: chr9:58131449-58131614 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 130
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 31, 0

Conread position: 508-787
Cow position: chr9:24887472-24887187 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 28

Conread position: 509-706
Cow position: chr9:58669653-58669453 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 153
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 135, 10

Conread position: 510-710
Cow position: chr9:51620708-51620512 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 162
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 29, 9

Conread position: 513-724
Cow position: chr9:5442263-5442052 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 166
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 13, 43

Conread position: 514-710
Cow position: chr9:41653058-41652860 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 164
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 515-705
Cow position: chr9:8563109-8562917 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 160
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 515-709
Cow position: chr9:41789546-41789360 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 149
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 24, 33

Conread position: 515-779
Cow position: chr9:64155588-64155862 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 515-787
Cow position: chr9:34287062-34286780 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 227
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 24, 55

Conread position: 516-704
Cow position: chr9:37141494-37141312 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 137
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 124, 85

Conread position: 517-787
Cow position: chr9:26278907-26279188 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 131

Conread position: 518-785
Cow position: chr9:36827390-36827118 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 203
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 21, 62

Conread position: 521-787
Cow position: chr9:9595692-9595971 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 208
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 18, 91

Conread position: 522-723
Cow position: chr9:34742466-34742662 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 160
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 14, 91

Conread position: 525-702
Cow position: chr9:13169410-13169579 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 144
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 13, 62

Conread position: 526-785
Cow position: chr9:3782620-3782352 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 200
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 12, 60

Conread position: 537-710
Cow position: chr9:33119637-33119811 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 144
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 137, 0

Conread position: 538-787
Cow position: chr9:32815882-32815633 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 181
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 136, 108

Conread position: 549-787
Cow position: chr9:4267747-4268001 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 191
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 125, 0

Conread position: 551-709
Cow position: chr9:33038227-33038385 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 113, 121

Conread position: 555-710
Cow position: chr9:53762928-53762773 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 133
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 120, 125

Conread position: 562-706
Cow position: chr9:17799850-17799708 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 121
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 112, 23

Conread position: 564-745
Cow position: chr9:51011322-51011513 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 140
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 90, 0

Conread position: 566-706
Cow position: chr9:30195429-30195294 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 117
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 108, 0

Conread position: 568-787
Cow position: chr9:49292930-49293162 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 173
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 54, 16

Conread position: 571-786
Cow position: chr9:58614704-58614476 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 169
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 61, 197

Conread position: 583-786
Cow position: chr9:3738019-3738242 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 166
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 89, 0

Conread position: 585-710
Cow position: chr9:9654112-9654237 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 89, 7

Conread position: 588-787
Cow position: chr9:4340972-4341178 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 156
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 86, 0

Conread position: 589-787
Cow position: chr9:12910202-12910420 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 162
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 32, 0

Show alignments to all cow chromosomes.