Cow genome map

Conread name: Tra1-TCH01A060005

Conread position: 1-154
Cow position: chr15:30470903-30470750 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 112
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-167
Cow position: chr15:10512203-10512038 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 121
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 75, 101

Conread position: 1-180
Cow position: chr15:8354110-8354289 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 138
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 1-185
Cow position: chr15:11559286-11559106 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 131
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 136, 46

Conread position: 1-190
Cow position: chr15:6905145-6905317 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 139
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 1-190
Cow position: chr15:18671387-18671192 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 64, 44

Conread position: 1-208
Cow position: chr15:22871678-22871880 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 153
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 136, 46

Conread position: 1-218
Cow position: chr15:38103816-38103610 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 172
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 45, 0

Conread position: 1-219
Cow position: chr15:38877235-38877022 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 169
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 88, 0

Conread position: 1-219
Cow position: chr15:41045475-41045686 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 161
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 139, 46

Conread position: 1-220
Cow position: chr15:25906976-25907195 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 176
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 45, 133

Conread position: 1-226
Cow position: chr15:33643159-33643374 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 168
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 103, 0

Conread position: 1-236
Cow position: chr15:11646423-11646191 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 164
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 62, 46

Conread position: 1-265
Cow position: chr15:12304707-12304968 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 44

Conread position: 1-273
Cow position: chr15:31857660-31857927 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 1-277
Cow position: chr15:47105110-47105375 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 206
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 70, 42

Conread position: 1-279
Cow position: chr15:39621407-39621679 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 205
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 70, 46

Conread position: 1-282
Cow position: chr15:6586648-6586369 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 46

Conread position: 1-286
Cow position: chr15:11658504-11658217 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 30

Conread position: 1-288
Cow position: chr15:21893847-21894132 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 202
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 70, 177

Conread position: 1-291
Cow position: chr15:5730009-5730288 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 210
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 6, 52

Conread position: 1-291
Cow position: chr15:21941777-21941496 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 199
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 67, 57

Conread position: 1-293
Cow position: chr15:50302251-50302539 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 46

Conread position: 1-294
Cow position: chr15:17100641-17100360 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 216
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 70, 46

Conread position: 1-294
Cow position: chr15:23768188-23767909 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 44

Conread position: 1-294
Cow position: chr15:40957645-40957935 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 46

Conread position: 1-295
Cow position: chr15:35417556-35417265 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 208
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 123, 46

Conread position: 1-295
Cow position: chr15:52611376-52611670 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 46

Conread position: 1-304
Cow position: chr15:29340132-29340429 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 94

Conread position: 1-304
Cow position: chr15:36259535-36259225 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 46

Conread position: 1-308
Cow position: chr15:23702848-23703143 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 1-316
Cow position: chr15:17233262-17233565 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 223
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 141, 46

Conread position: 1-321
Cow position: chr15:38806431-38806116 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 19

Conread position: 1-328
Cow position: chr15:13387145-13387471 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 273

Conread position: 1-331
Cow position: chr15:28126975-28126656 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 233
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 136, 7

Conread position: 1-332
Cow position: chr15:19119542-19119223 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 234
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 36, 72

Conread position: 1-334
Cow position: chr15:52757917-52758247 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 222
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 54, 48

Conread position: 1-335
Cow position: chr15:5234932-5234608 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 1-335
Cow position: chr15:16112469-16112799 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 46

Conread position: 1-335
Cow position: chr15:27247570-27247905 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 239
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 43, 19

Conread position: 1-336
Cow position: chr15:236806-237126 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 234
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 69, 19

Conread position: 1-336
Cow position: chr15:3700220-3699886 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 46

Conread position: 1-336
Cow position: chr15:8962076-8962395 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 68

Conread position: 1-336
Cow position: chr15:14505499-14505825 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 32

Conread position: 1-336
Cow position: chr15:15708045-15707721 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 46

Conread position: 1-336
Cow position: chr15:17870213-17869896 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 59

Conread position: 1-336
Cow position: chr15:21832367-21832026 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 177

Conread position: 1-336
Cow position: chr15:22759109-22759441 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 231
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 64, 48

Conread position: 1-336
Cow position: chr15:22939256-22938938 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 240
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 59, 46

Conread position: 1-336
Cow position: chr15:24045030-24044694 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 88

Conread position: 1-336
Cow position: chr15:25511108-25510775 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 48

Conread position: 1-336
Cow position: chr15:30047477-30047138 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 0

Conread position: 1-336
Cow position: chr15:33306179-33306504 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 1-336
Cow position: chr15:33376743-33376410 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 48

Conread position: 1-336
Cow position: chr15:41000002-40999654 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 0

Conread position: 1-337
Cow position: chr15:20391206-20390891 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 31

Conread position: 1-365
Cow position: chr15:13515435-13515793 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 45

Conread position: 1-367
Cow position: chr15:42789079-42788732 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 57

Conread position: 2-116
Cow position: chr15:21821056-21821170 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 92
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 41, 56

Conread position: 2-216
Cow position: chr15:16261383-16261597 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 155
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 167, 51

Conread position: 2-229
Cow position: chr15:23696841-23696626 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 166
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 45, 0

Conread position: 2-263
Cow position: chr15:50322664-50322920 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 189
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 69, 45

Conread position: 2-286
Cow position: chr15:6462427-6462154 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 204
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 40, 34

Conread position: 2-292
Cow position: chr15:36782255-36781982 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 206
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 45, 0

Conread position: 2-336
Cow position: chr15:9871347-9871017 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 258

Conread position: 2-336
Cow position: chr15:16583626-16583314 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 240
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 5, 14

Conread position: 2-336
Cow position: chr15:21389097-21388773 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 45

Conread position: 3-257
Cow position: chr15:27900440-27900184 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 189
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 68, 50

Conread position: 3-292
Cow position: chr15:37931693-37931415 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 198
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 68, 30

Conread position: 3-295
Cow position: chr15:40343315-40343607 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 199
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 43, 51

Conread position: 3-334
Cow position: chr15:5420813-5420508 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 242
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 40, 101

Conread position: 3-336
Cow position: chr15:6530777-6530440 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 50

Conread position: 3-336
Cow position: chr15:10456944-10456602 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 57

Conread position: 5-161
Cow position: chr15:2380426-2380583 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 113
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 54, 0

Conread position: 5-319
Cow position: chr15:14870813-14871132 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 100

Conread position: 5-336
Cow position: chr15:1830634-1830964 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 31

Conread position: 7-278
Cow position: chr15:29810194-29810449 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 197
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 64, 39

Conread position: 7-295
Cow position: chr15:40009579-40009293 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 184

Conread position: 7-336
Cow position: chr15:6970062-6970376 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 40

Conread position: 8-230
Cow position: chr15:2674377-2674596 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 150
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 134, 41

Conread position: 8-242
Cow position: chr15:8610245-8610016 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 161
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 134, 41

Conread position: 9-267
Cow position: chr15:11629809-11629553 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 180
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 44, 167

Conread position: 9-334
Cow position: chr15:9494220-9493902 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 230
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 34, 61

Conread position: 9-334
Cow position: chr15:41582985-41583312 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 48

Conread position: 10-168
Cow position: chr15:36353746-36353902 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 79, 0

Conread position: 10-260
Cow position: chr15:39598320-39598560 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 187
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 47, 0

Conread position: 11-336
Cow position: chr15:23487089-23486775 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 12-300
Cow position: chr15:51427744-51427460 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 8

Conread position: 12-336
Cow position: chr15:20472466-20472148 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 8

Conread position: 13-333
Cow position: chr15:15881009-15881318 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 7

Conread position: 15-274
Cow position: chr15:21522869-21523126 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 32

Conread position: 17-336
Cow position: chr15:1330018-1329708 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 18-337
Cow position: chr15:52380380-52380689 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 230
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 8, 17

Conread position: 21-261
Cow position: chr15:8007069-8007306 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 174
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 119, 44

Conread position: 21-301
Cow position: chr15:43914002-43913721 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 25

Conread position: 22-294
Cow position: chr15:38883237-38883513 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 22-336
Cow position: chr15:47843160-47842868 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 222
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 49, 6

Conread position: 23-336
Cow position: chr15:24967879-24968185 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 24

Conread position: 24-295
Cow position: chr15:20482762-20482480 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 192
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 35, 0

Conread position: 25-235
Cow position: chr15:23114929-23115132 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 152
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 45, 160

Conread position: 25-291
Cow position: chr15:3493875-3494145 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 191
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 9, 21

Conread position: 26-287
Cow position: chr15:5683234-5683483 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 184
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 27, 0

Conread position: 26-295
Cow position: chr15:33303417-33303690 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 202
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 32, 21

Conread position: 26-334
Cow position: chr15:25584996-25584693 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 26-336
Cow position: chr15:5498940-5498631 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 21

Conread position: 26-336
Cow position: chr15:16603913-16604217 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 211
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 45, 84

Conread position: 26-336
Cow position: chr15:33284971-33285268 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 27

Conread position: 26-336
Cow position: chr15:43030933-43030624 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 17

Conread position: 27-294
Cow position: chr15:19771227-19771485 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 198
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 116, 20

Conread position: 28-295
Cow position: chr15:19812738-19813007 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 189
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 22, 5

Conread position: 29-312
Cow position: chr15:39599533-39599813 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 138

Conread position: 29-329
Cow position: chr15:20370364-20370079 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 219
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 42, 144

Conread position: 30-243
Cow position: chr15:21900235-21900022 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 144
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 110, 13

Conread position: 30-336
Cow position: chr15:52764632-52764333 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 215
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 43, 109

Conread position: 31-308
Cow position: chr15:41792360-41792641 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 197
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 30, 0

Conread position: 31-335
Cow position: chr15:38969230-38969533 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 213
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 36, 18

Conread position: 31-336
Cow position: chr15:19733459-19733760 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 32-265
Cow position: chr15:29544467-29544703 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 155
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 32-336
Cow position: chr15:30985690-30985399 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 223
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 101, 154

Conread position: 33-286
Cow position: chr15:53118420-53118668 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 180
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 22, 12

Conread position: 34-163
Cow position: chr15:17337455-17337587 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 36-322
Cow position: chr15:32742352-32742060 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 210
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 12, 197

Conread position: 38-335
Cow position: chr15:40547080-40546785 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 8

Conread position: 42-203
Cow position: chr15:17859130-17858969 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 29, 97

Conread position: 42-288
Cow position: chr15:33625062-33625303 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 178
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 232, 91

Conread position: 42-336
Cow position: chr15:32979933-32979636 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 44-274
Cow position: chr15:47821916-47822135 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 176
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 14, 87

Conread position: 44-336
Cow position: chr15:37823206-37822912 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 45-336
Cow position: chr15:8428118-8428403 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 215
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 7, 141

Conread position: 47-259
Cow position: chr15:43776464-43776660 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 151
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 30, 0

Conread position: 47-294
Cow position: chr15:43248658-43248415 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 175
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 72, 12

Conread position: 47-336
Cow position: chr15:9072316-9072033 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 205
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 23, 11

Conread position: 47-336
Cow position: chr15:23180547-23180817 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 217
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 11, 44

Conread position: 48-269
Cow position: chr15:17343912-17344135 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 153
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 19, 150

Conread position: 48-304
Cow position: chr15:44051391-44051133 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 194
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 10, 39

Conread position: 48-336
Cow position: chr15:20459192-20458902 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 136

Conread position: 48-336
Cow position: chr15:24074905-24074615 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 20

Conread position: 48-336
Cow position: chr15:26896593-26896323 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 49-226
Cow position: chr15:34145041-34144867 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 136
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 22, 10

Conread position: 49-239
Cow position: chr15:26919162-26918972 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 145
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 23, 88

Conread position: 49-280
Cow position: chr15:29353442-29353214 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 165
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 7, 99

Conread position: 49-336
Cow position: chr15:36422772-36423046 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 50-241
Cow position: chr15:39436335-39436513 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 144
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 16, 103

Conread position: 50-265
Cow position: chr15:49922250-49922466 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 22, 148

Conread position: 50-295
Cow position: chr15:6421743-6421990 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 169
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 23, 0

Conread position: 50-336
Cow position: chr15:6163254-6163542 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 50-336
Cow position: chr15:16639898-16640181 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 26

Conread position: 50-336
Cow position: chr15:26421483-26421204 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 207
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 66, 9

Conread position: 51-208
Cow position: chr15:20268870-20269030 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 115
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 91, 0

Conread position: 51-257
Cow position: chr15:10088434-10088633 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 148
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 66, 119

Conread position: 51-292
Cow position: chr15:39805764-39806001 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 169
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 18, 101

Conread position: 51-296
Cow position: chr15:28140960-28140714 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 170
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 16, 60

Conread position: 51-309
Cow position: chr15:11363062-11362807 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 195
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 20, 128

Conread position: 53-336
Cow position: chr15:144118-143836 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 40

Conread position: 54-253
Cow position: chr15:20081882-20082075 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 152
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 32, 0

Conread position: 54-282
Cow position: chr15:2145012-2144788 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 158
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 19, 116

Conread position: 54-336
Cow position: chr15:25208643-25208369 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 55

Conread position: 55-243
Cow position: chr15:26637778-26637967 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 138
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 14, 25

Conread position: 55-257
Cow position: chr15:12733719-12733923 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 146
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 12, 0

Conread position: 55-265
Cow position: chr15:8027521-8027733 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 149
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 10, 0

Conread position: 55-292
Cow position: chr15:51850837-51850598 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 167
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 87, 69

Conread position: 55-307
Cow position: chr15:40265851-40266111 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 179
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 11, 0

Conread position: 55-332
Cow position: chr15:5568207-5567927 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 55-336
Cow position: chr15:16492794-16493078 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 55-336
Cow position: chr15:19054366-19054647 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 156

Conread position: 57-218
Cow position: chr15:49230218-49230061 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 14, 53

Conread position: 57-220
Cow position: chr15:4861792-4861628 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 80, 9

Conread position: 57-318
Cow position: chr15:22713707-22713451 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 191
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 59, 72

Conread position: 57-326
Cow position: chr15:24128773-24129035 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 204
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 81, 61

Conread position: 57-336
Cow position: chr15:5571517-5571238 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 118

Conread position: 57-336
Cow position: chr15:5639741-5640020 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 72

Conread position: 57-336
Cow position: chr15:22532360-22532636 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 0

Conread position: 57-336
Cow position: chr15:41323576-41323849 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 13

Conread position: 57-336
Cow position: chr15:51822265-51822540 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 10

Conread position: 58-265
Cow position: chr15:38394541-38394747 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 156
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 80, 122

Conread position: 59-229
Cow position: chr15:16667374-16667208 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 44, 0

Conread position: 59-262
Cow position: chr15:26903321-26903519 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 147
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 198, 106

Conread position: 59-295
Cow position: chr15:45216945-45217177 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 167
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 200, 87

Conread position: 59-324
Cow position: chr15:21421062-21421328 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 167
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 14, 122

Conread position: 60-294
Cow position: chr15:14020598-14020827 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 175
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 132, 0

Conread position: 61-158
Cow position: chr15:24982066-24981969 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 82
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 66-294
Cow position: chr15:9062464-9062238 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 177
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 72, 12

Conread position: 67-267
Cow position: chr15:33525550-33525755 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 148
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 71, 11

Conread position: 68-336
Cow position: chr15:34104404-34104664 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 97

Conread position: 70-336
Cow position: chr15:19403116-19403373 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 109

Conread position: 71-336
Cow position: chr15:4138269-4138533 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 189

Conread position: 73-336
Cow position: chr15:9267914-9267665 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 55

Conread position: 76-336
Cow position: chr15:7578989-7578729 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 184

Conread position: 76-336
Cow position: chr15:27890820-27890559 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 189
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 66, 0

Conread position: 76-336
Cow position: chr15:46611068-46611316 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 190
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 64, 95

Conread position: 84-335
Cow position: chr15:30982074-30982311 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 192
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 175, 84

Conread position: 91-336
Cow position: chr15:23798373-23798124 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 222

Conread position: 98-336
Cow position: chr15:28038920-28039150 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 0

Show alignments to all cow chromosomes.