Cow genome map

Conread name: Tra1-TCH01A060005

Conread position: 1-131
Cow position: chr18:49841269-49841138 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 54, 41

Conread position: 1-179
Cow position: chr18:16686348-16686525 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 134
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 64, 46

Conread position: 1-182
Cow position: chr18:8300006-8299822 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 145
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 69, 0

Conread position: 1-186
Cow position: chr18:19896464-19896651 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 140
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 45, 59

Conread position: 1-190
Cow position: chr18:18369372-18369562 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 140
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 70, 0

Conread position: 1-201
Cow position: chr18:1399363-1399562 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 141
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 44, 0

Conread position: 1-220
Cow position: chr18:19623366-19623150 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 150
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 141, 45

Conread position: 1-225
Cow position: chr18:42431624-42431835 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 160
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 56, 0

Conread position: 1-226
Cow position: chr18:33896437-33896654 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 176
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 44, 115

Conread position: 1-227
Cow position: chr18:2864003-2864231 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 168
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 61, 189

Conread position: 1-229
Cow position: chr18:15340457-15340674 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 160
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 70, 48

Conread position: 1-236
Cow position: chr18:3018088-3018320 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 172
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 38, 24

Conread position: 1-236
Cow position: chr18:33008050-33007815 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-243
Cow position: chr18:32883294-32883053 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 179
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 194, 46

Conread position: 1-259
Cow position: chr18:10322793-10322536 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 173
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 136, 44

Conread position: 1-270
Cow position: chr18:47722608-47722341 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 180
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 141, 49

Conread position: 1-272
Cow position: chr18:30794416-30794157 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 77

Conread position: 1-276
Cow position: chr18:11691421-11691691 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 68

Conread position: 1-277
Cow position: chr18:56183922-56183656 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 48

Conread position: 1-282
Cow position: chr18:16462002-16462278 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 190
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 141, 48

Conread position: 1-291
Cow position: chr18:56159449-56159169 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 210
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 136, 58

Conread position: 1-293
Cow position: chr18:6609871-6610158 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 213
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 70, 35

Conread position: 1-294
Cow position: chr18:25647261-25647548 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 178

Conread position: 1-294
Cow position: chr18:51212171-51211883 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 57

Conread position: 1-295
Cow position: chr18:21176176-21175880 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 211
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 60, 32

Conread position: 1-295
Cow position: chr18:25206201-25206492 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 1-296
Cow position: chr18:39875272-39875561 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 24

Conread position: 1-301
Cow position: chr18:11684969-11684686 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 218
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 46, 0

Conread position: 1-320
Cow position: chr18:55000754-55001061 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 108

Conread position: 1-323
Cow position: chr18:4884530-4884842 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 0

Conread position: 1-324
Cow position: chr18:9365906-9365583 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 44

Conread position: 1-331
Cow position: chr18:56181474-56181791 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 52

Conread position: 1-333
Cow position: chr18:23765013-23765341 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 58

Conread position: 1-334
Cow position: chr18:13507749-13508065 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 0

Conread position: 1-334
Cow position: chr18:35636359-35636686 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 48

Conread position: 1-334
Cow position: chr18:38687071-38686757 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 1-334
Cow position: chr18:44262618-44262280 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 158

Conread position: 1-334
Cow position: chr18:55589499-55589814 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 24

Conread position: 1-335
Cow position: chr18:8104955-8105283 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 44

Conread position: 1-335
Cow position: chr18:11377352-11377031 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 238
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 136, 59

Conread position: 1-335
Cow position: chr18:15880857-15881194 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 170

Conread position: 1-335
Cow position: chr18:36458921-36458594 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 46

Conread position: 1-335
Cow position: chr18:56150656-56150996 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 1-336
Cow position: chr18:3027372-3027706 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 44

Conread position: 1-336
Cow position: chr18:4433064-4432731 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 48

Conread position: 1-336
Cow position: chr18:4796960-4796628 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 46

Conread position: 1-336
Cow position: chr18:6103110-6103444 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 253
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 64, 90

Conread position: 1-336
Cow position: chr18:9974341-9974666 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 1-336
Cow position: chr18:10576092-10575771 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 0

Conread position: 1-336
Cow position: chr18:11183929-11183601 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 46

Conread position: 1-336
Cow position: chr18:12242264-12241934 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 256
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 154, 109

Conread position: 1-336
Cow position: chr18:17005247-17004913 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 24

Conread position: 1-336
Cow position: chr18:19356861-19356529 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 228
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 141, 49

Conread position: 1-336
Cow position: chr18:22591132-22591466 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 50

Conread position: 1-336
Cow position: chr18:28657924-28658249 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 48

Conread position: 1-336
Cow position: chr18:33299891-33299563 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 57

Conread position: 1-336
Cow position: chr18:33407604-33407281 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 53

Conread position: 1-336
Cow position: chr18:40759194-40758875 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 46

Conread position: 1-336
Cow position: chr18:42966853-42966497 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 58

Conread position: 1-336
Cow position: chr18:43283769-43284092 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 235
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 72, 57

Conread position: 1-336
Cow position: chr18:43473915-43473583 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 232
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 111, 49

Conread position: 1-336
Cow position: chr18:45104454-45104787 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 137

Conread position: 1-336
Cow position: chr18:45571001-45570683 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 0

Conread position: 1-336
Cow position: chr18:47511993-47511653 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 45

Conread position: 1-336
Cow position: chr18:51405919-51406233 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 244
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 89, 39

Conread position: 1-336
Cow position: chr18:55505394-55505063 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 41

Conread position: 1-336
Cow position: chr18:55552954-55552624 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 21

Conread position: 1-337
Cow position: chr18:22181116-22181448 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 228
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 62, 48

Conread position: 1-337
Cow position: chr18:38607214-38606894 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 163

Conread position: 1-340
Cow position: chr18:44801902-44802228 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 63

Conread position: 1-341
Cow position: chr18:19273109-19273444 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 23

Conread position: 1-350
Cow position: chr18:23766423-23766777 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 45

Conread position: 2-179
Cow position: chr18:4602027-4602198 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 59, 0

Conread position: 2-245
Cow position: chr18:21205348-21205116 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 170
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 69, 19

Conread position: 2-316
Cow position: chr18:44548926-44549225 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 56

Conread position: 2-336
Cow position: chr18:16417716-16418034 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 42

Conread position: 2-336
Cow position: chr18:29356638-29356978 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 178

Conread position: 2-336
Cow position: chr18:50082271-50082578 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 257, 44

Conread position: 3-220
Cow position: chr18:18592458-18592247 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 170
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 66, 41

Conread position: 3-253
Cow position: chr18:22411626-22411875 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 169
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 38, 17

Conread position: 3-275
Cow position: chr18:34324965-34325238 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 184
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 66, 33

Conread position: 3-288
Cow position: chr18:32873577-32873290 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 210
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 29, 51

Conread position: 3-295
Cow position: chr18:6310069-6309780 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 67

Conread position: 3-324
Cow position: chr18:51500088-51500409 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 217
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 58, 33

Conread position: 3-336
Cow position: chr18:5487230-5486910 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 4-141
Cow position: chr18:51594820-51594952 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 58, 42

Conread position: 4-285
Cow position: chr18:38985677-38985397 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 4-331
Cow position: chr18:55787911-55787590 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 225
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 279, 43

Conread position: 4-336
Cow position: chr18:12117864-12118186 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 43

Conread position: 5-242
Cow position: chr18:48713534-48713306 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 171
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 42, 0

Conread position: 5-285
Cow position: chr18:42479603-42479870 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 42

Conread position: 5-336
Cow position: chr18:4666225-4666549 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 41

Conread position: 5-336
Cow position: chr18:9089683-9089365 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 0

Conread position: 6-236
Cow position: chr18:42432110-42432329 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 176
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 51, 0

Conread position: 6-290
Cow position: chr18:28923858-28924127 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 212
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 253, 26

Conread position: 6-336
Cow position: chr18:28101616-28101285 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 0

Conread position: 7-231
Cow position: chr18:219321-219097 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 172
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 49, 187

Conread position: 7-272
Cow position: chr18:32773860-32773602 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 180
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 52, 26

Conread position: 7-293
Cow position: chr18:4368795-4369078 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 196
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 32, 83

Conread position: 7-314
Cow position: chr18:4381275-4380976 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 217
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 48, 40

Conread position: 7-336
Cow position: chr18:36631925-36632251 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 225
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 135, 42

Conread position: 7-336
Cow position: chr18:40196444-40196117 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 42

Conread position: 10-131
Cow position: chr18:42751630-42751752 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 85, 0

Conread position: 10-209
Cow position: chr18:15677621-15677421 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 145
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 10, 30

Conread position: 10-336
Cow position: chr18:21195363-21195680 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 100

Conread position: 12-286
Cow position: chr18:5995444-5995181 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 207
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 42, 8

Conread position: 12-286
Cow position: chr18:50382229-50381966 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 208
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 59, 28

Conread position: 12-336
Cow position: chr18:18339990-18340294 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 0

Conread position: 13-219
Cow position: chr18:4629015-4628808 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 155
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 62, 7

Conread position: 15-196
Cow position: chr18:48452035-48451847 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 134
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 27, 0

Conread position: 15-257
Cow position: chr18:35582124-35582364 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 183
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 41, 32

Conread position: 15-288
Cow position: chr18:55789021-55789285 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 32

Conread position: 15-290
Cow position: chr18:16847668-16847403 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 194
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 128, 155

Conread position: 15-292
Cow position: chr18:11166954-11166682 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 32

Conread position: 15-334
Cow position: chr18:55397283-55396978 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 230
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 45, 66

Conread position: 15-336
Cow position: chr18:52635105-52635422 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 5

Conread position: 16-336
Cow position: chr18:26938955-26938644 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 93

Conread position: 16-336
Cow position: chr18:29058522-29058833 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 19-295
Cow position: chr18:19143540-19143816 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 200

Conread position: 22-289
Cow position: chr18:36230756-36231005 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 195
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 91, 0

Conread position: 22-336
Cow position: chr18:51712734-51713050 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 25

Conread position: 24-262
Cow position: chr18:1582313-1582542 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 174
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 119, 35

Conread position: 25-332
Cow position: chr18:7956109-7955811 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 22

Conread position: 26-262
Cow position: chr18:37382126-37382365 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 181
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 28, 21

Conread position: 26-326
Cow position: chr18:52382666-52382366 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 204
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 20, 109

Conread position: 26-336
Cow position: chr18:19849791-19850085 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 31

Conread position: 26-336
Cow position: chr18:37023588-37023897 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 0

Conread position: 28-305
Cow position: chr18:43822990-43823263 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 205
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 110, 38

Conread position: 28-336
Cow position: chr18:11367795-11368119 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 224
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 11, 167

Conread position: 30-387
Cow position: chr18:54974034-54974385 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 253
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 189, 46

Conread position: 31-293
Cow position: chr18:17334451-17334715 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 185
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 33, 14

Conread position: 31-317
Cow position: chr18:6275776-6275494 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 12

Conread position: 31-336
Cow position: chr18:22236994-22237296 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 222
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 41, 35

Conread position: 31-336
Cow position: chr18:44236164-44235857 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 35

Conread position: 32-209
Cow position: chr18:54056514-54056344 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 138
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 9, 0

Conread position: 32-243
Cow position: chr18:39215839-39215625 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 147
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 24, 13

Conread position: 32-309
Cow position: chr18:54572335-54572612 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 199
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 110, 17

Conread position: 32-332
Cow position: chr18:22092735-22092444 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 29

Conread position: 36-222
Cow position: chr18:14085412-14085232 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 139
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 101, 14

Conread position: 36-232
Cow position: chr18:48828826-48829024 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 143
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 35, 17

Conread position: 36-307
Cow position: chr18:4625858-4625589 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 208
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 12, 79

Conread position: 37-334
Cow position: chr18:43564186-43563889 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 219
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 14, 63

Conread position: 38-284
Cow position: chr18:17669844-17670091 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 175
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 7, 101

Conread position: 39-336
Cow position: chr18:5571109-5570817 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 206
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 100, 31

Conread position: 42-292
Cow position: chr18:13360016-13359765 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 89

Conread position: 42-333
Cow position: chr18:19619898-19619612 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 19

Conread position: 42-336
Cow position: chr18:6290738-6290443 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 39

Conread position: 43-220
Cow position: chr18:306119-306289 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 43-274
Cow position: chr18:46436815-46437032 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 164
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 28, 67

Conread position: 43-294
Cow position: chr18:36478147-36477899 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 174
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 28, 13

Conread position: 43-336
Cow position: chr18:33272878-33272605 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 217
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 95, 9

Conread position: 47-220
Cow position: chr18:15260-15435 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 123
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 5, 0

Conread position: 47-336
Cow position: chr18:36335787-36336065 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 206
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 20, 8

Conread position: 48-294
Cow position: chr18:33157760-33157522 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 177
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 23, 63

Conread position: 48-328
Cow position: chr18:29796482-29796765 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 206
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 173, 137

Conread position: 48-336
Cow position: chr18:20174186-20174471 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 9

Conread position: 49-253
Cow position: chr18:12023693-12023891 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 154
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 129, 0

Conread position: 49-277
Cow position: chr18:51656100-51656335 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 166
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 20, 0

Conread position: 49-282
Cow position: chr18:36098147-36097914 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 177
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 13, 139

Conread position: 49-304
Cow position: chr18:23447138-23447395 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 193
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 17, 137

Conread position: 49-336
Cow position: chr18:4316254-4315958 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 155

Conread position: 50-256
Cow position: chr18:5549543-5549335 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 139
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 92, 0

Conread position: 50-286
Cow position: chr18:9806359-9806119 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 172
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 20, 0

Conread position: 50-333
Cow position: chr18:41238814-41238534 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 200
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 92, 121

Conread position: 51-323
Cow position: chr18:18640321-18640044 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 194
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 24, 258

Conread position: 51-336
Cow position: chr18:10954419-10954140 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 245

Conread position: 51-336
Cow position: chr18:51443489-51443769 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 207
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 13, 122

Conread position: 52-292
Cow position: chr18:23807935-23808170 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 180
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 85, 7

Conread position: 52-295
Cow position: chr18:33158893-33158654 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 179
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 13, 63

Conread position: 52-336
Cow position: chr18:20641550-20641821 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 210
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 57, 99

Conread position: 52-336
Cow position: chr18:47183343-47183626 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 114

Conread position: 54-205
Cow position: chr18:3211810-3211658 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 123
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 17, 132

Conread position: 55-285
Cow position: chr18:12122727-12122959 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 160
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 12, 0

Conread position: 55-335
Cow position: chr18:35289328-35289054 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 199
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 6, 117

Conread position: 55-336
Cow position: chr18:45979637-45979363 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 207
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 7, 179

Conread position: 55-336
Cow position: chr18:56361668-56361941 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 13

Conread position: 55-376
Cow position: chr18:5783171-5783491 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 198
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 10, 125

Conread position: 56-336
Cow position: chr18:31672576-31672844 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 206
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 81, 19

Conread position: 57-236
Cow position: chr18:17391049-17391215 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 139
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 52, 0

Conread position: 57-286
Cow position: chr18:18919022-18919244 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 174
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 14, 66

Conread position: 57-296
Cow position: chr18:3115397-3115159 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 139

Conread position: 57-329
Cow position: chr18:56167985-56168251 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 193
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 103, 112

Conread position: 57-334
Cow position: chr18:7649931-7649653 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 149

Conread position: 57-336
Cow position: chr18:42608389-42608669 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 199
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 85, 0

Conread position: 57-336
Cow position: chr18:46108444-46108719 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 53

Conread position: 58-336
Cow position: chr18:13293444-13293168 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 106

Conread position: 58-336
Cow position: chr18:47745991-47745711 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 197
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 5, 0

Conread position: 59-266
Cow position: chr18:46048691-46048490 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 157
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 74, 28

Conread position: 60-335
Cow position: chr18:22065421-22065701 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 207
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 10, 202

Conread position: 60-336
Cow position: chr18:49200575-49200306 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 208
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 80, 53

Conread position: 67-198
Cow position: chr18:15809986-15810113 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 101
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 104, 0

Conread position: 68-192
Cow position: chr18:35419733-35419609 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 70-285
Cow position: chr18:31562474-31562680 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 154
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 46, 0

Conread position: 70-334
Cow position: chr18:5647169-5646898 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 202
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 68, 110

Conread position: 70-336
Cow position: chr18:47314368-47314639 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 72-336
Cow position: chr18:3209632-3209380 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 189
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 88, 55

Conread position: 76-336
Cow position: chr18:3180335-3180079 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 100

Conread position: 77-336
Cow position: chr18:49161529-49161797 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 78-286
Cow position: chr18:47930952-47931151 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 154
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 106, 0

Conread position: 83-270
Cow position: chr18:5711759-5711943 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 145
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 54, 96

Conread position: 83-334
Cow position: chr18:16044244-16044489 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 175
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 100, 0

Conread position: 83-336
Cow position: chr18:11867248-11867012 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 192
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 85, 0

Conread position: 83-336
Cow position: chr18:49665249-49665498 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 196
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 7, 46

Conread position: 96-336
Cow position: chr18:50637564-50637801 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 0

Show alignments to all cow chromosomes.