Cow genome map

Conread name: Tra1-TCH01A060005

Conread position: 1-124
Cow position:
Alignm length: 125
Alignm identity: 97
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 58, 110

Conread position: 1-147
Cow position:
Alignm length: 149
Alignm identity: 111
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 53, 0

Conread position: 1-183
Cow position:
Alignm length: 190
Alignm identity: 143
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 58, 9

Conread position: 1-183
Cow position:
Alignm length: 183
Alignm identity: 134
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 41, 0

Conread position: 1-185
Cow position:
Alignm length: 185
Alignm identity: 130
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 1-189
Cow position:
Alignm length: 193
Alignm identity: 135
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 51, 44

Conread position: 1-208
Cow position:
Alignm length: 210
Alignm identity: 147
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 62, 48

Conread position: 1-220
Cow position:
Alignm length: 221
Alignm identity: 164
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 36, 0

Conread position: 1-226
Cow position:
Alignm length: 228
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 31

Conread position: 1-265
Cow position:
Alignm length: 268
Alignm identity: 200
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 55, 45

Conread position: 1-267
Cow position:
Alignm length: 275
Alignm identity: 202
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 28, 47

Conread position: 1-274
Cow position:
Alignm length: 279
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 0

Conread position: 1-278
Cow position:
Alignm length: 285
Alignm identity: 203
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 138, 35

Conread position: 1-281
Cow position:
Alignm length: 283
Alignm identity: 193
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 62, 48

Conread position: 1-282
Cow position:
Alignm length: 282
Alignm identity: 198
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 108, 0

Conread position: 1-292
Cow position:
Alignm length: 303
Alignm identity: 207
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 50, 116

Conread position: 1-326
Cow position:
Alignm length: 331
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 181

Conread position: 1-331
Cow position:
Alignm length: 335
Alignm identity: 239
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 71, 31

Conread position: 1-333
Cow position:
Alignm length: 334
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 49

Conread position: 1-334
Cow position:
Alignm length: 335
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 169

Conread position: 1-334
Cow position:
Alignm length: 336
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 19

Conread position: 1-335
Cow position:
Alignm length: 336
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 46

Conread position: 1-335
Cow position:
Alignm length: 336
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 45

Conread position: 1-336
Cow position:
Alignm length: 338
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 48

Conread position: 1-336
Cow position:
Alignm length: 336
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 1-336
Cow position:
Alignm length: 337
Alignm identity: 228
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 141, 49

Conread position: 1-336
Cow position:
Alignm length: 360
Alignm identity: 246
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 66, 46

Conread position: 1-336
Cow position:
Alignm length: 338
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 48

Conread position: 1-336
Cow position:
Alignm length: 337
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 303, 44

Conread position: 1-336
Cow position:
Alignm length: 347
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 44

Conread position: 1-336
Cow position:
Alignm length: 339
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 48

Conread position: 1-336
Cow position:
Alignm length: 339
Alignm identity: 236
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 65, 46

Conread position: 1-336
Cow position:
Alignm length: 336
Alignm identity: 234
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 59, 0

Conread position: 2-190
Cow position:
Alignm length: 189
Alignm identity: 140
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 24, 0

Conread position: 2-193
Cow position:
Alignm length: 194
Alignm identity: 147
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 53, 45

Conread position: 2-198
Cow position:
Alignm length: 199
Alignm identity: 149
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 158, 93

Conread position: 2-243
Cow position:
Alignm length: 242
Alignm identity: 160
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 56, 0

Conread position: 2-263
Cow position:
Alignm length: 264
Alignm identity: 195
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 54, 35

Conread position: 2-294
Cow position:
Alignm length: 297
Alignm identity: 210
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 60, 19

Conread position: 2-314
Cow position:
Alignm length: 316
Alignm identity: 220
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 71, 19

Conread position: 2-350
Cow position:
Alignm length: 349
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 0

Conread position: 3-157
Cow position:
Alignm length: 155
Alignm identity: 112
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 131, 0

Conread position: 3-220
Cow position:
Alignm length: 221
Alignm identity: 158
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 56, 28

Conread position: 3-220
Cow position:
Alignm length: 219
Alignm identity: 153
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 68, 130

Conread position: 3-235
Cow position:
Alignm length: 236
Alignm identity: 163
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 68, 42

Conread position: 3-267
Cow position:
Alignm length: 267
Alignm identity: 192
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 58, 42

Conread position: 3-280
Cow position:
Alignm length: 279
Alignm identity: 183
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 78, 44

Conread position: 4-156
Cow position:
Alignm length: 153
Alignm identity: 116
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 21, 0

Conread position: 4-182
Cow position:
Alignm length: 179
Alignm identity: 134
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 38, 0

Conread position: 4-336
Cow position:
Alignm length: 334
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 247

Conread position: 5-335
Cow position:
Alignm length: 334
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 42

Conread position: 7-266
Cow position:
Alignm length: 262
Alignm identity: 172
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 130, 38

Conread position: 7-336
Cow position:
Alignm length: 331
Alignm identity: 219
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 135, 42

Conread position: 10-274
Cow position:
Alignm length: 266
Alignm identity: 186
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 14, 60

Conread position: 10-295
Cow position:
Alignm length: 286
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 11-336
Cow position:
Alignm length: 332
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 14

Conread position: 12-267
Cow position:
Alignm length: 259
Alignm identity: 185
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 126, 8

Conread position: 16-336
Cow position:
Alignm length: 323
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 31

Conread position: 18-282
Cow position:
Alignm length: 267
Alignm identity: 195
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 44, 29

Conread position: 22-282
Cow position:
Alignm length: 264
Alignm identity: 184
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 41, 22

Conread position: 22-282
Cow position:
Alignm length: 264
Alignm identity: 183
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 41, 22

Conread position: 22-294
Cow position:
Alignm length: 277
Alignm identity: 197
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 51, 14

Conread position: 23-284
Cow position:
Alignm length: 265
Alignm identity: 184
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 117, 13

Conread position: 25-336
Cow position:
Alignm length: 318
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 21

Conread position: 26-275
Cow position:
Alignm length: 253
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 20

Conread position: 26-286
Cow position:
Alignm length: 272
Alignm identity: 189
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 19, 33

Conread position: 26-335
Cow position:
Alignm length: 313
Alignm identity: 218
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 112, 21

Conread position: 26-336
Cow position:
Alignm length: 325
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 21

Conread position: 26-336
Cow position:
Alignm length: 318
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 21

Conread position: 26-336
Cow position:
Alignm length: 311
Alignm identity: 225
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 15, 0

Conread position: 28-335
Cow position:
Alignm length: 310
Alignm identity: 210
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 27, 44

Conread position: 30-331
Cow position:
Alignm length: 311
Alignm identity: 221
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 41, 17

Conread position: 34-214
Cow position:
Alignm length: 187
Alignm identity: 146
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 19, 0

Conread position: 35-295
Cow position:
Alignm length: 267
Alignm identity: 185
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 19, 178

Conread position: 35-336
Cow position:
Alignm length: 307
Alignm identity: 222
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 32, 81

Conread position: 35-336
Cow position:
Alignm length: 304
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 19

Conread position: 35-336
Cow position:
Alignm length: 307
Alignm identity: 212
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 21, 10

Conread position: 38-336
Cow position:
Alignm length: 302
Alignm identity: 215
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 29, 133

Conread position: 39-277
Cow position:
Alignm length: 241
Alignm identity: 167
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 32, 81

Conread position: 42-295
Cow position:
Alignm length: 258
Alignm identity: 185
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 20, 204

Conread position: 45-220
Cow position:
Alignm length: 179
Alignm identity: 134
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 5, 127

Conread position: 45-225
Cow position:
Alignm length: 182
Alignm identity: 131
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 92, 7

Conread position: 47-331
Cow position:
Alignm length: 285
Alignm identity: 202
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 70, 0

Conread position: 49-220
Cow position:
Alignm length: 176
Alignm identity: 128
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 93, 46

Conread position: 49-256
Cow position:
Alignm length: 209
Alignm identity: 155
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 10, 61

Conread position: 49-331
Cow position:
Alignm length: 283
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 0

Conread position: 50-292
Cow position:
Alignm length: 244
Alignm identity: 179
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 21, 128

Conread position: 50-332
Cow position:
Alignm length: 284
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 257

Conread position: 50-336
Cow position:
Alignm length: 288
Alignm identity: 204
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 92, 16

Conread position: 51-336
Cow position:
Alignm length: 286
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 0

Conread position: 51-336
Cow position:
Alignm length: 288
Alignm identity: 203
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 65, 0

Conread position: 53-292
Cow position:
Alignm length: 244
Alignm identity: 180
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 18, 119

Conread position: 53-336
Cow position:
Alignm length: 285
Alignm identity: 201
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 89, 216

Conread position: 54-294
Cow position:
Alignm length: 241
Alignm identity: 172
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 14, 0

Conread position: 55-202
Cow position:
Alignm length: 150
Alignm identity: 113
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 12, 0

Conread position: 55-336
Cow position:
Alignm length: 284
Alignm identity: 199
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 12, 139

Conread position: 57-282
Cow position:
Alignm length: 227
Alignm identity: 173
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 90, 9

Conread position: 57-295
Cow position:
Alignm length: 242
Alignm identity: 178
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 86, 18

Conread position: 57-336
Cow position:
Alignm length: 294
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 121

Conread position: 57-336
Cow position:
Alignm length: 283
Alignm identity: 200
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 6, 110

Conread position: 58-282
Cow position:
Alignm length: 229
Alignm identity: 129
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 80, 0

Conread position: 58-316
Cow position:
Alignm length: 261
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 82

Conread position: 58-330
Cow position:
Alignm length: 277
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 58-336
Cow position:
Alignm length: 289
Alignm identity: 206
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 63, 97

Conread position: 58-337
Cow position:
Alignm length: 284
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 59-220
Cow position:
Alignm length: 163
Alignm identity: 121
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 12, 128

Conread position: 59-303
Cow position:
Alignm length: 249
Alignm identity: 178
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 12, 155

Conread position: 60-227
Cow position:
Alignm length: 168
Alignm identity: 120
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 69-336
Cow position:
Alignm length: 277
Alignm identity: 193
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 60, 270

Conread position: 69-336
Cow position:
Alignm length: 270
Alignm identity: 196
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 66, 39

Conread position: 70-288
Cow position:
Alignm length: 224
Alignm identity: 170
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 70, 38

Conread position: 70-334
Cow position:
Alignm length: 270
Alignm identity: 202
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 220, 108

Conread position: 72-336
Cow position:
Alignm length: 266
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 121

Conread position: 72-336
Cow position:
Alignm length: 278
Alignm identity: 200
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 65, 100

Conread position: 73-243
Cow position:
Alignm length: 172
Alignm identity: 121
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 69, 0

Conread position: 77-259
Cow position:
Alignm length: 184
Alignm identity: 145
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 60, 89

Conread position: 78-336
Cow position:
Alignm length: 260
Alignm identity: 188
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 64, 79

Conread position: 85-336
Cow position:
Alignm length: 255
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 95

Show alignments to all cow chromosomes.