Cow genome map
| Conread name: | Tra1-TCH01A090068 |
| Conread position: | 1-163 |
| Cow position: | chr10:53976595-53976756 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr10:14425388-14425552 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr10:15173177-15173015 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 60, 16 |
| Conread position: | 1-165 |
| Cow position: | chr10:15395018-15395183 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 44, 21 |
| Conread position: | 1-165 |
| Cow position: | chr10:18044182-18044021 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr10:27773830-27773992 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr10:53484771-53484935 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 60, 20 |
| Conread position: | 1-166 |
| Cow position: | chr10:6229019-6229184 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 1-166 |
| Cow position: | chr10:34165298-34165463 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-268 |
| Cow position: | chr10:44981673-44981404 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 209 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 38, 19 |
| Conread position: | 1-356 |
| Cow position: | chr10:52418980-52419325 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 21 |
| Conread position: | 1-422 |
| Cow position: | chr10:33845647-33846064 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 293 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 268, 21 |
| Conread position: | 1-426 |
| Cow position: | chr10:59336371-59336790 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 302 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 20, 89 |
| Conread position: | 1-428 |
| Cow position: | chr10:4541844-4542248 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 284 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 267, 21 |
| Conread position: | 1-428 |
| Cow position: | chr10:14643550-14643957 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 294 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 63, 16 |
| Conread position: | 1-428 |
| Cow position: | chr10:32880720-32881137 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 293 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 60, 21 |
| Conread position: | 1-428 |
| Cow position: | chr10:44316552-44316997 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 24 |
| Conread position: | 1-428 |
| Cow position: | chr10:46749444-46749027 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr10:66618217-66618633 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 267, 21 |
| Conread position: | 1-433 |
| Cow position: | chr10:13339509-13339929 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 299 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 63, 16 |
| Conread position: | 1-433 |
| Cow position: | chr10:33155065-33155485 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 297 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-433 |
| Cow position: | chr10:50577324-50577747 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 291 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 36, 21 |
| Conread position: | 1-476 |
| Cow position: | chr10:36757882-36758345 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 291 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 2-155 |
| Cow position: | chr10:30427854-30428004 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 62, 20 |
| Conread position: | 2-166 |
| Cow position: | chr10:33481587-33481429 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 62, 20 |
| Conread position: | 2-430 |
| Cow position: | chr10:25943626-25944043 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 295 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 62, 20 |
| Conread position: | 4-376 |
| Cow position: | chr10:27376045-27375677 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 18 |
| Conread position: | 9-321 |
| Cow position: | chr10:52426205-52426510 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 9-429 |
| Cow position: | chr10:52671147-52671567 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 297 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 57, 13 |
| Conread position: | 11-319 |
| Cow position: | chr10:28227998-28228305 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 14 |
| Conread position: | 11-430 |
| Cow position: | chr10:17857170-17856766 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 275 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 53, 11 |
| Conread position: | 12-165 |
| Cow position: | chr10:6603696-6603544 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 55, 10 |
| Conread position: | 21-165 |
| Cow position: | chr10:33715926-33716069 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 44, 101 |
| Conread position: | 24-266 |
| Cow position: | chr10:37052350-37052574 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 43, 145 |
| Conread position: | 56-437 |
| Cow position: | chr10:10107547-10107124 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 284 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 8, 153 |
| Conread position: | 171-430 |
| Cow position: | chr10:53900821-53901080 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 94, 9 |
| Conread position: | 186-426 |
| Cow position: | chr10:15167983-15168232 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 83, 172 |
| Conread position: | 190-412 |
| Cow position: | chr10:10346651-10346879 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 79, 98 |
| Conread position: | 190-428 |
| Cow position: | chr10:50726035-50726286 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 190-446 |
| Cow position: | chr10:57426546-57426812 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 191-428 |
| Cow position: | chr10:19974312-19974068 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 74, 106 |
| Conread position: | 192-428 |
| Cow position: | chr10:9563357-9563602 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 73, 95 |
| Conread position: | 272-428 |
| Cow position: | chr10:28228328-28228484 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 53, 24 |
Show alignments to all cow chromosomes.