Cow genome map
| Conread name: | Tra1-TCH01A090068 |
| Conread position: | 1-147 |
| Cow position: | chr11:8656766-8656622 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 63, 16 |
| Conread position: | 1-161 |
| Cow position: | chr11:31440726-31440886 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 65, 21 |
| Conread position: | 1-161 |
| Cow position: | chr11:70057560-70057720 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr11:1631423-1631585 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 63, 16 |
| Conread position: | 1-165 |
| Cow position: | chr11:16790812-16790650 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 63, 16 |
| Conread position: | 1-165 |
| Cow position: | chr11:18183254-18183090 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr11:19222281-19222117 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr11:32266214-32266378 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr11:46872711-46872875 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 69, 21 |
| Conread position: | 1-165 |
| Cow position: | chr11:56514270-56514107 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-165 |
| Cow position: | chr11:65837725-65837561 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 1-165 |
| Cow position: | chr11:72538995-72538831 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 1-166 |
| Cow position: | chr11:5534027-5534187 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-166 |
| Cow position: | chr11:15423029-15422865 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 60, 21 |
| Conread position: | 1-166 |
| Cow position: | chr11:34807788-34807623 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-166 |
| Cow position: | chr11:48799555-48799719 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 63, 24 |
| Conread position: | 1-269 |
| Cow position: | chr11:40495732-40495999 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 21 |
| Conread position: | 1-270 |
| Cow position: | chr11:2682271-2682520 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 59, 21 |
| Conread position: | 1-306 |
| Cow position: | chr11:64037372-64037084 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 216 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 45, 21 |
| Conread position: | 1-378 |
| Cow position: | chr11:19830555-19830932 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 1-417 |
| Cow position: | chr11:35534166-35534566 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 283 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 61, 21 |
| Conread position: | 1-418 |
| Cow position: | chr11:31720201-31720619 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 21 |
| Conread position: | 1-424 |
| Cow position: | chr11:61618950-61618550 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 284 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr11:1639692-1640107 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 297 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 63, 16 |
| Conread position: | 1-428 |
| Cow position: | chr11:13616044-13616461 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr11:18187921-18188338 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 294 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 60, 24 |
| Conread position: | 1-428 |
| Cow position: | chr11:30530328-30529911 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 296 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 60, 21 |
| Conread position: | 1-428 |
| Cow position: | chr11:38545312-38544907 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 228, 21 |
| Conread position: | 1-428 |
| Cow position: | chr11:63150275-63150694 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 284 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 55, 21 |
| Conread position: | 1-428 |
| Cow position: | chr11:65814959-65814542 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 293 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr11:76395347-76394932 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 293 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 1-433 |
| Cow position: | chr11:65816524-65816110 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 296 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-437 |
| Cow position: | chr11:48721654-48722078 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 300 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-467 |
| Cow position: | chr11:15303272-15303715 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 312 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 64, 16 |
| Conread position: | 2-270 |
| Cow position: | chr11:26137370-26137631 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 63, 20 |
| Conread position: | 2-428 |
| Cow position: | chr11:18923294-18922884 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 294 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 62, 15 |
| Conread position: | 2-428 |
| Cow position: | chr11:32079682-32080098 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 62, 20 |
| Conread position: | 9-165 |
| Cow position: | chr11:33942145-33942299 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 56, 13 |
| Conread position: | 9-166 |
| Cow position: | chr11:36263735-36263574 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 11-165 |
| Cow position: | chr11:31605795-31605951 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 21-165 |
| Cow position: | chr11:35578061-35578207 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 24-425 |
| Cow position: | chr11:18621610-18622025 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 281 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 37, 83 |
| Conread position: | 31-428 |
| Cow position: | chr11:75071214-75070821 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 33, 48 |
| Conread position: | 124-265 |
| Cow position: | chr11:8383420-8383559 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 55, 47 |
| Conread position: | 190-427 |
| Cow position: | chr11:56828542-56828787 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 78, 57 |
| Conread position: | 190-428 |
| Cow position: | chr11:21164288-21164535 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 75, 97 |
| Conread position: | 190-431 |
| Cow position: | chr11:53680807-53680556 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 78, 97 |
| Conread position: | 190-432 |
| Cow position: | chr11:31440896-31441146 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 78, 11 |
| Conread position: | 264-416 |
| Cow position: | chr11:40496014-40496166 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 57, 9 |
Show alignments to all cow chromosomes.