Cow genome map
| Conread name: | Tra1-TCH01A090068 |
| Conread position: | 1-162 |
| Cow position: | chr13:19195380-19195542 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-164 |
| Cow position: | chr13:3005373-3005536 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 44, 21 |
| Conread position: | 1-165 |
| Cow position: | chr13:17564098-17564262 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr13:22789486-22789325 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr13:37451530-37451694 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr13:48618617-48618780 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-166 |
| Cow position: | chr13:20687253-20687088 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-166 |
| Cow position: | chr13:38393471-38393636 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 60, 21 |
| Conread position: | 1-166 |
| Cow position: | chr13:41895394-41895558 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 63, 16 |
| Conread position: | 1-166 |
| Cow position: | chr13:42031050-42031216 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 52, 21 |
| Conread position: | 1-166 |
| Cow position: | chr13:43706428-43706265 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 60, 21 |
| Conread position: | 1-168 |
| Cow position: | chr13:32726137-32725969 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 43, 21 |
| Conread position: | 1-267 |
| Cow position: | chr13:12400684-12400432 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 63, 24 |
| Conread position: | 1-272 |
| Cow position: | chr13:15723468-15723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-383 |
| Cow position: | chr13:32843036-32843416 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr13:1021737-1021320 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 295 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 63, 24 |
| Conread position: | 1-428 |
| Cow position: | chr13:7548930-7548513 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 296 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr13:10806111-10806527 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 297 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr13:12538590-12538173 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 293 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr13:17472481-17472064 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 296 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr13:23592091-23591677 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 285 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 63, 16 |
| Conread position: | 1-428 |
| Cow position: | chr13:24840738-24841144 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 290 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 63, 16 |
| Conread position: | 1-428 |
| Cow position: | chr13:26714152-26713733 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 291 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 51, 21 |
| Conread position: | 1-428 |
| Cow position: | chr13:33242884-33243317 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 21 |
| Conread position: | 1-428 |
| Cow position: | chr13:48439250-48438836 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 290 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr13:51596181-51596598 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 294 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr13:54070962-54070548 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 291 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-448 |
| Cow position: | chr13:35519580-35520014 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 310 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 2-373 |
| Cow position: | chr13:57251618-57251979 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 20 |
| Conread position: | 3-178 |
| Cow position: | chr13:42720786-42720960 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 62, 14 |
| Conread position: | 4-428 |
| Cow position: | chr13:18438803-18438412 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 283 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 57, 18 |
| Conread position: | 4-432 |
| Cow position: | chr13:51890764-51891184 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 298 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 60, 21 |
| Conread position: | 9-166 |
| Cow position: | chr13:3081339-3081495 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 55, 11 |
| Conread position: | 9-434 |
| Cow position: | chr13:40218461-40218046 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 289 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 56, 13 |
| Conread position: | 11-190 |
| Cow position: | chr13:42038540-42038357 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 54, 11 |
| Conread position: | 36-165 |
| Cow position: | chr13:58460291-58460420 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 25, 52 |
| Conread position: | 190-428 |
| Cow position: | chr13:3005543-3005791 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 191-428 |
| Cow position: | chr13:26256621-26256868 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 89, 0 |
Show alignments to all cow chromosomes.