Cow genome map
| Conread name: | Tra1-TCH01A090068 |
| Conread position: | 1-157 |
| Cow position: | chr15:20127021-20127177 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr15:316193-316357 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr15:10408211-10408048 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr15:11729606-11729442 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 60, 21 |
| Conread position: | 1-165 |
| Cow position: | chr15:17220422-17220584 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 60, 16 |
| Conread position: | 1-165 |
| Cow position: | chr15:18626528-18626364 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr15:22485067-22485230 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 63, 24 |
| Conread position: | 1-165 |
| Cow position: | chr15:26614475-26614311 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr15:34201263-34201099 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 64, 20 |
| Conread position: | 1-165 |
| Cow position: | chr15:40814115-40813952 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr15:42654550-42654714 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr15:45870082-45870246 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-166 |
| Cow position: | chr15:6290206-6290041 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 1-166 |
| Cow position: | chr15:29310967-29311130 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-166 |
| Cow position: | chr15:38621571-38621414 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-268 |
| Cow position: | chr15:20344124-20344371 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 9, 22 |
| Conread position: | 1-269 |
| Cow position: | chr15:45996973-45996702 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 199 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-426 |
| Cow position: | chr15:18249099-18248649 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 309 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 60, 21 |
| Conread position: | 1-428 |
| Cow position: | chr15:5086764-5086347 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 298 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr15:15372844-15373261 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 296 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr15:20133940-20134352 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 288 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 1-428 |
| Cow position: | chr15:20450721-20451169 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 306 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 1-428 |
| Cow position: | chr15:39716297-39716710 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 284 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr15:40569336-40569753 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 296 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr15:44592126-44592541 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 291 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 277, 21 |
| Conread position: | 1-429 |
| Cow position: | chr15:17293413-17293004 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 296 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-437 |
| Cow position: | chr15:12687537-12687963 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 303 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-439 |
| Cow position: | chr15:51316678-51316250 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 306 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 2-158 |
| Cow position: | chr15:44645114-44644959 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 62, 20 |
| Conread position: | 2-165 |
| Cow position: | chr15:33484238-33484075 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 59, 18 |
| Conread position: | 2-266 |
| Cow position: | chr15:47152814-47152576 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 62, 20 |
| Conread position: | 2-428 |
| Cow position: | chr15:45005761-45005334 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 304 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 63, 20 |
| Conread position: | 3-359 |
| Cow position: | chr15:22871949-22872297 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 19 |
| Conread position: | 3-432 |
| Cow position: | chr15:25072281-25071849 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 18 |
| Conread position: | 8-162 |
| Cow position: | chr15:27276068-27275914 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 57, 13 |
| Conread position: | 9-426 |
| Cow position: | chr15:9345776-9345371 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 21-166 |
| Cow position: | chr15:22979295-22979150 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-166 |
| Cow position: | chr15:15263607-15263751 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 24-166 |
| Cow position: | chr15:32450886-32451029 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 41, 69 |
| Conread position: | 24-268 |
| Cow position: | chr15:601555-601794 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 122, 20 |
| Conread position: | 24-428 |
| Cow position: | chr15:767242-766847 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 283 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 40, 145 |
| Conread position: | 24-430 |
| Cow position: | chr15:28063234-28062838 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 274 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 246, 103 |
| Conread position: | 25-426 |
| Cow position: | chr15:1993411-1992991 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 24 |
| Conread position: | 43-428 |
| Cow position: | chr15:15137182-15137555 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 21, 124 |
| Conread position: | 127-428 |
| Cow position: | chr15:14188671-14188360 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 229 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 42, 68 |
| Conread position: | 190-428 |
| Cow position: | chr15:38617147-38617391 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 190-432 |
| Cow position: | chr15:10408043-10407795 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 75, 97 |
Show alignments to all cow chromosomes.