Cow genome map
| Conread name: | Tra1-TCH01A090068 |
| Conread position: | 1-131 |
| Cow position: | chr16:3882825-3882695 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-160 |
| Cow position: | chr16:46375636-46375795 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 1-162 |
| Cow position: | chr16:1633801-1633642 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-165 |
| Cow position: | chr16:1156176-1156012 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr16:2251514-2251350 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr16:3884823-3884987 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr16:4837834-4837998 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 1-165 |
| Cow position: | chr16:26958568-26958728 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 63, 18 |
| Conread position: | 1-165 |
| Cow position: | chr16:27116722-27116886 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 63, 24 |
| Conread position: | 1-165 |
| Cow position: | chr16:30602600-30602437 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 62, 21 |
| Conread position: | 1-165 |
| Cow position: | chr16:31536204-31536368 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr16:33910465-33910629 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 64, 20 |
| Conread position: | 1-165 |
| Cow position: | chr16:35411141-35411305 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 62, 21 |
| Conread position: | 1-165 |
| Cow position: | chr16:43173716-43173556 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 1-165 |
| Cow position: | chr16:52807892-52808056 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 22, 16 |
| Conread position: | 1-165 |
| Cow position: | chr16:54303088-54302927 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-166 |
| Cow position: | chr16:19261000-19261165 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-166 |
| Cow position: | chr16:32768812-32768647 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 1-167 |
| Cow position: | chr16:37427673-37427836 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 63, 20 |
| Conread position: | 1-265 |
| Cow position: | chr16:17778390-17778663 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 1-269 |
| Cow position: | chr16:43117430-43117670 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-337 |
| Cow position: | chr16:27841680-27842010 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-374 |
| Cow position: | chr16:53835498-53835879 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 262 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-423 |
| Cow position: | chr16:22832492-22832911 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 300 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 1-428 |
| Cow position: | chr16:1626539-1626129 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 291 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 63, 16 |
| Conread position: | 1-428 |
| Cow position: | chr16:2520174-2519756 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 24 |
| Conread position: | 1-428 |
| Cow position: | chr16:3879626-3879209 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 293 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr16:12382027-12382444 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 293 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 65, 21 |
| Conread position: | 1-428 |
| Cow position: | chr16:18356549-18356978 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 16 |
| Conread position: | 1-428 |
| Cow position: | chr16:19679896-19680305 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 285 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 1-428 |
| Cow position: | chr16:22319399-22318982 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 294 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr16:23950267-23949850 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 296 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr16:26371731-26371318 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 290 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr16:34946863-34947292 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 1-428 |
| Cow position: | chr16:35442400-35442820 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr16:53128998-53128578 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 21 |
| Conread position: | 1-428 |
| Cow position: | chr16:53811021-53811447 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 291 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 60, 21 |
| Conread position: | 1-436 |
| Cow position: | chr16:30580476-30580893 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 302 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-477 |
| Cow position: | chr16:37095081-37095546 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 311 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 2-165 |
| Cow position: | chr16:34778667-34778832 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 28, 19 |
| Conread position: | 2-165 |
| Cow position: | chr16:35514025-35513864 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 62, 15 |
| Conread position: | 2-428 |
| Cow position: | chr16:23524569-23524999 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 294 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 62, 20 |
| Conread position: | 5-165 |
| Cow position: | chr16:2782763-2782916 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 59, 17 |
| Conread position: | 9-165 |
| Cow position: | chr16:11299799-11299644 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 9-166 |
| Cow position: | chr16:44525114-44525269 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 58, 16 |
| Conread position: | 10-428 |
| Cow position: | chr16:18062067-18062479 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 12 |
| Conread position: | 12-163 |
| Cow position: | chr16:55253399-55253548 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 52, 10 |
| Conread position: | 24-428 |
| Cow position: | chr16:46440868-46441263 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 280 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 40, 110 |
| Conread position: | 26-166 |
| Cow position: | chr16:31795054-31794913 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 63-428 |
| Cow position: | chr16:56223379-56223025 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 108 |
| Conread position: | 190-417 |
| Cow position: | chr16:22483558-22483791 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 190-428 |
| Cow position: | chr16:8914192-8913948 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 82, 207 |
| Conread position: | 190-428 |
| Cow position: | chr16:10641102-10640855 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 83, 78 |
| Conread position: | 190-430 |
| Cow position: | chr16:43170326-43170564 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 143, 69 |
| Conread position: | 190-449 |
| Cow position: | chr16:31536370-31536635 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 75, 96 |
Show alignments to all cow chromosomes.