Cow genome map
| Conread name: | Tra1-TCH01A090068 |
| Conread position: | 1-164 |
| Cow position: | chr2:39753209-39753372 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 63, 24 |
| Conread position: | 1-165 |
| Cow position: | chr2:18160252-18160416 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr2:30930567-30930403 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr2:41630292-41630128 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr2:47571834-47571670 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 63, 22 |
| Conread position: | 1-165 |
| Cow position: | chr2:47840100-47839936 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr2:64659673-64659509 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr2:70651760-70651603 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr2:74229931-74230095 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 1-165 |
| Cow position: | chr2:80565665-80565826 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-166 |
| Cow position: | chr2:80147596-80147761 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 1-255 |
| Cow position: | chr2:85328435-85328678 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 1-270 |
| Cow position: | chr2:62460981-62461246 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 146, 24 |
| Conread position: | 1-370 |
| Cow position: | chr2:1633161-1632801 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 1-371 |
| Cow position: | chr2:16808057-16808415 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-417 |
| Cow position: | chr2:63086867-63087261 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 276 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 279, 16 |
| Conread position: | 1-420 |
| Cow position: | chr2:75069196-75068764 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 24 |
| Conread position: | 1-427 |
| Cow position: | chr2:44506892-44507303 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 66, 21 |
| Conread position: | 1-428 |
| Cow position: | chr2:7295207-7294790 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 295 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr2:25245083-25245500 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 301 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr2:35400444-35400008 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 24 |
| Conread position: | 1-428 |
| Cow position: | chr2:46766952-46766535 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 294 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr2:46774883-46775300 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 293 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr2:52373486-52373902 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 285 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 65, 21 |
| Conread position: | 1-428 |
| Cow position: | chr2:55287214-55287630 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 298 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 1-428 |
| Cow position: | chr2:58697402-58697826 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 298 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr2:58853014-58853433 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 290 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr2:66701440-66701022 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 295 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr2:77921568-77921987 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 302 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-429 |
| Cow position: | chr2:37170967-37170549 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 294 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-430 |
| Cow position: | chr2:32227438-32227856 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 301 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-431 |
| Cow position: | chr2:65682779-65683203 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-433 |
| Cow position: | chr2:7547155-7546733 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 298 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-433 |
| Cow position: | chr2:21890474-21890897 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 298 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-436 |
| Cow position: | chr2:80585896-80585471 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 298 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-437 |
| Cow position: | chr2:11252189-11252604 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 299 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 64, 18 |
| Conread position: | 1-438 |
| Cow position: | chr2:55825939-55825512 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 297 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 261, 21 |
| Conread position: | 2-146 |
| Cow position: | chr2:40413272-40413416 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 62, 20 |
| Conread position: | 2-161 |
| Cow position: | chr2:46026000-46026157 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 64, 20 |
| Conread position: | 2-165 |
| Cow position: | chr2:9019831-9019992 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 62, 20 |
| Conread position: | 2-268 |
| Cow position: | chr2:28587422-28587677 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 62, 23 |
| Conread position: | 3-165 |
| Cow position: | chr2:57979741-57979576 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 3-428 |
| Cow position: | chr2:86168933-86169346 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 294 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 61, 19 |
| Conread position: | 4-165 |
| Cow position: | chr2:66060285-66060127 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 57, 13 |
| Conread position: | 4-269 |
| Cow position: | chr2:21635965-21636225 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 18 |
| Conread position: | 4-428 |
| Cow position: | chr2:19148459-19148870 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 291 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 60, 18 |
| Conread position: | 5-165 |
| Cow position: | chr2:74691309-74691467 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 59, 16 |
| Conread position: | 9-165 |
| Cow position: | chr2:58342759-58342915 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 56, 13 |
| Conread position: | 9-165 |
| Cow position: | chr2:82290406-82290562 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 9-417 |
| Cow position: | chr2:68958634-68959014 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 270 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 52, 12 |
| Conread position: | 9-428 |
| Cow position: | chr2:11882081-11881673 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 292 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 68, 11 |
| Conread position: | 12-429 |
| Cow position: | chr2:36857554-36857972 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 270 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 10, 44 |
| Conread position: | 24-165 |
| Cow position: | chr2:45558138-45557997 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 41, 27 |
| Conread position: | 58-428 |
| Cow position: | chr2:56945311-56945671 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 252 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 207, 108 |
| Conread position: | 85-428 |
| Cow position: | chr2:30688480-30688125 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 84, 44 |
| Conread position: | 119-269 |
| Cow position: | chr2:24812758-24812607 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 50, 100 |
| Conread position: | 190-428 |
| Cow position: | chr2:3484573-3484814 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 75, 97 |
| Conread position: | 202-430 |
| Cow position: | chr2:30930393-30930159 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 76, 0 |
Show alignments to all cow chromosomes.