Cow genome map
| Conread name: | Tra1-TCH01A090068 |
| Conread position: | 1-145 |
| Cow position: | chr3:24769323-24769182 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 63, 16 |
| Conread position: | 1-154 |
| Cow position: | chr3:13009335-13009488 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 63, 24 |
| Conread position: | 1-165 |
| Cow position: | chr3:1466232-1466068 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr3:2469918-2470082 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr3:6047050-6046886 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr3:7829479-7829326 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 63, 16 |
| Conread position: | 1-165 |
| Cow position: | chr3:7864148-7864312 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr3:7866184-7866020 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr3:10132054-10131890 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr3:11243890-11243726 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr3:19474799-19474636 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 63, 10 |
| Conread position: | 1-165 |
| Cow position: | chr3:25718625-25718464 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 63, 16 |
| Conread position: | 1-165 |
| Cow position: | chr3:26611850-26611690 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr3:27866261-27866097 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr3:30994007-30993846 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 63, 22 |
| Conread position: | 1-165 |
| Cow position: | chr3:38280469-38280633 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr3:62737515-62737351 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 1-165 |
| Cow position: | chr3:64111610-64111449 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr3:76509605-76509769 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr3:78788820-78788984 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 66, 20 |
| Conread position: | 1-166 |
| Cow position: | chr3:22885338-22885502 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 65, 21 |
| Conread position: | 1-166 |
| Cow position: | chr3:24812458-24812293 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-166 |
| Cow position: | chr3:51795950-51796117 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 54, 24 |
| Conread position: | 1-219 |
| Cow position: | chr3:61963765-61963557 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 168, 24 |
| Conread position: | 1-246 |
| Cow position: | chr3:22665344-22665591 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 24 |
| Conread position: | 1-263 |
| Cow position: | chr3:8008880-8008616 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 24 |
| Conread position: | 1-373 |
| Cow position: | chr3:13613453-13613820 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 1-414 |
| Cow position: | chr3:52711194-52711593 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 284 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-417 |
| Cow position: | chr3:53803046-53802649 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 287 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-424 |
| Cow position: | chr3:34562561-34562140 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 286 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 57, 25 |
| Conread position: | 1-428 |
| Cow position: | chr3:2409813-2409398 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 63, 24 |
| Conread position: | 1-428 |
| Cow position: | chr3:2445845-2446262 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 295 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 1-428 |
| Cow position: | chr3:5451497-5451087 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 293 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr3:7020455-7020871 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 295 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr3:7530652-7530234 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 290 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 64, 20 |
| Conread position: | 1-428 |
| Cow position: | chr3:14728863-14729278 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 293 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr3:19115502-19115915 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 285 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr3:34170683-34170275 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 287 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr3:38529600-38530014 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 293 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr3:45835258-45834841 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 299 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr3:45840485-45840071 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 296 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 274, 21 |
| Conread position: | 1-428 |
| Cow position: | chr3:45935390-45935806 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 290 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 64, 24 |
| Conread position: | 1-428 |
| Cow position: | chr3:55263883-55263471 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 294 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr3:64509579-64509153 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 298 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr3:69037170-69036753 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 290 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr3:80440862-80441278 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 303 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr3:81827532-81827947 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 267, 21 |
| Conread position: | 1-432 |
| Cow position: | chr3:29708222-29708647 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 295 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 1-437 |
| Cow position: | chr3:52683486-52683058 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 299 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 2-166 |
| Cow position: | chr3:57722827-57722664 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 63, 20 |
| Conread position: | 2-442 |
| Cow position: | chr3:15057101-15056671 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 297 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 63, 20 |
| Conread position: | 3-165 |
| Cow position: | chr3:26607319-26607481 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 58, 19 |
| Conread position: | 3-443 |
| Cow position: | chr3:71012479-71012060 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 292 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 61, 19 |
| Conread position: | 4-428 |
| Cow position: | chr3:28466532-28466941 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 284 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 61, 21 |
| Conread position: | 9-165 |
| Cow position: | chr3:32682602-32682755 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 58, 13 |
| Conread position: | 9-165 |
| Cow position: | chr3:78501958-78501802 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 56, 13 |
| Conread position: | 9-166 |
| Cow position: | chr3:3250560-3250402 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 10-428 |
| Cow position: | chr3:8810213-8809805 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 287 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 54, 12 |
| Conread position: | 12-264 |
| Cow position: | chr3:60064508-60064752 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 154, 48 |
| Conread position: | 12-428 |
| Cow position: | chr3:84917684-84917276 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 53, 9 |
| Conread position: | 23-428 |
| Cow position: | chr3:2481877-2482275 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 278 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 14, 145 |
| Conread position: | 24-166 |
| Cow position: | chr3:11713338-11713195 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 24-178 |
| Cow position: | chr3:74477165-74477009 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 39-429 |
| Cow position: | chr3:49874156-49873780 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 130 |
| Conread position: | 184-428 |
| Cow position: | chr3:74477036-74476780 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 190-417 |
| Cow position: | chr3:23830790-23830557 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 75, 97 |
| Conread position: | 190-417 |
| Cow position: | chr3:75163669-75163436 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 78, 97 |
| Conread position: | 190-428 |
| Cow position: | chr3:2593590-2593348 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 95, 233 |
| Conread position: | 190-428 |
| Cow position: | chr3:10131884-10131633 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 82, 218 |
| Conread position: | 190-428 |
| Cow position: | chr3:13009502-13009747 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 25, 20 |
| Conread position: | 190-428 |
| Cow position: | chr3:19205724-19205478 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 80, 97 |
| Conread position: | 190-428 |
| Cow position: | chr3:42333328-42333573 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 75, 97 |
| Conread position: | 190-428 |
| Cow position: | chr3:78209729-78209976 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 190-429 |
| Cow position: | chr3:19206406-19206160 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 12, 61 |
| Conread position: | 190-433 |
| Cow position: | chr3:1466062-1465810 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 75, 97 |
| Conread position: | 191-429 |
| Cow position: | chr3:81350058-81349813 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 83, 76 |
| Conread position: | 264-429 |
| Cow position: | chr3:20352846-20352679 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 49, 7 |
| Conread position: | 271-426 |
| Cow position: | chr3:8008577-8008417 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 43, 25 |
Show alignments to all cow chromosomes.