Cow genome map
| Conread name: | Tra1-TCH01A090068 |
| Conread position: | 1-162 |
| Cow position: | chr4:36162278-36162117 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-163 |
| Cow position: | chr4:35044534-35044372 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr4:10906951-10907114 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-165 |
| Cow position: | chr4:11259505-11259669 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr4:11737479-11737320 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-165 |
| Cow position: | chr4:16738218-16738382 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr4:16938331-16938489 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr4:30414821-30414984 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 64, 18 |
| Conread position: | 1-165 |
| Cow position: | chr4:32835603-32835767 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr4:34268163-34267999 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr4:46952485-46952321 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr4:52121045-52120883 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 1-165 |
| Cow position: | chr4:54860522-54860686 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 1-269 |
| Cow position: | chr4:46297417-46297163 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 60, 21 |
| Conread position: | 1-372 |
| Cow position: | chr4:55322798-55322440 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr4:4717483-4717072 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 278 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr4:6262329-6262747 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 290 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 60, 19 |
| Conread position: | 1-428 |
| Cow position: | chr4:12564084-12563667 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 299 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr4:14526380-14526797 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 293 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr4:22906920-22907335 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 296 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 63, 24 |
| Conread position: | 1-428 |
| Cow position: | chr4:31956641-31956225 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 295 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 1-428 |
| Cow position: | chr4:35238998-35238581 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 295 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr4:35552119-35552535 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 286 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 1-428 |
| Cow position: | chr4:48555318-48555730 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 295 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 63, 16 |
| Conread position: | 1-431 |
| Cow position: | chr4:30044753-30045167 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 292 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 64, 16 |
| Conread position: | 1-432 |
| Cow position: | chr4:48842487-48842068 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 298 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-433 |
| Cow position: | chr4:5233810-5234230 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 295 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-433 |
| Cow position: | chr4:43402448-43402026 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 294 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-433 |
| Cow position: | chr4:65584003-65583600 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 293 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-439 |
| Cow position: | chr4:9263026-9262600 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 300 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 1-441 |
| Cow position: | chr4:45059104-45059533 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 302 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 63, 7 |
| Conread position: | 2-417 |
| Cow position: | chr4:14529213-14528811 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 284 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 62, 20 |
| Conread position: | 2-426 |
| Cow position: | chr4:17142114-17142509 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 284 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 63, 20 |
| Conread position: | 2-428 |
| Cow position: | chr4:27763487-27763065 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 272 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 243, 20 |
| Conread position: | 4-430 |
| Cow position: | chr4:10382749-10383165 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 295 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 60, 18 |
| Conread position: | 9-428 |
| Cow position: | chr4:60136321-60136754 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 16 |
| Conread position: | 9-434 |
| Cow position: | chr4:18953669-18954084 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 294 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 24-166 |
| Cow position: | chr4:45560677-45560534 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 33, 115 |
| Conread position: | 24-429 |
| Cow position: | chr4:8195338-8195741 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 40, 115 |
| Conread position: | 26-373 |
| Cow position: | chr4:32711590-32711961 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 268 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 39, 116 |
| Conread position: | 190-427 |
| Cow position: | chr4:13487587-13487344 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 54, 45 |
| Conread position: | 190-427 |
| Cow position: | chr4:20826872-20826626 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 190-428 |
| Cow position: | chr4:5495238-5495484 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 190-428 |
| Cow position: | chr4:12228736-12228489 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 75, 97 |
Show alignments to all cow chromosomes.