Cow genome map
| Conread name: | Tra1-TCH01A090068 |
| Conread position: | 1-163 |
| Cow position: | chr5:3030044-3029883 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 55, 123 |
| Conread position: | 1-163 |
| Cow position: | chr5:9539856-9540016 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-164 |
| Cow position: | chr5:53177680-53177843 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 65, 21 |
| Conread position: | 1-164 |
| Cow position: | chr5:66391123-66390960 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr5:667101-667262 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 63, 18 |
| Conread position: | 1-165 |
| Cow position: | chr5:3039275-3039111 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr5:8769255-8769419 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr5:21509397-21509560 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 63, 25 |
| Conread position: | 1-165 |
| Cow position: | chr5:35332414-35332253 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 66, 21 |
| Conread position: | 1-165 |
| Cow position: | chr5:37023895-37024052 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr5:44903461-44903297 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr5:64799493-64799656 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 58, 21 |
| Conread position: | 1-165 |
| Cow position: | chr5:67945678-67945842 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-319 |
| Cow position: | chr5:13565595-13565929 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 24 |
| Conread position: | 1-403 |
| Cow position: | chr5:47865372-47864987 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 281 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 64, 24 |
| Conread position: | 1-417 |
| Cow position: | chr5:59558346-59557951 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 280 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 63, 18 |
| Conread position: | 1-428 |
| Cow position: | chr5:8762681-8763102 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 295 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr5:27889291-27889717 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 275 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr5:33334206-33334624 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr5:50824044-50823617 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 167, 21 |
| Conread position: | 1-428 |
| Cow position: | chr5:60097101-60096678 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 287 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr5:60151243-60150827 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 291 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr5:61893762-61894181 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 293 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 53, 21 |
| Conread position: | 1-429 |
| Cow position: | chr5:15705438-15705852 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 291 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-429 |
| Cow position: | chr5:26827748-26828166 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 300 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-429 |
| Cow position: | chr5:35483004-35482560 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 1-429 |
| Cow position: | chr5:49869250-49868833 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 291 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 63, 11 |
| Conread position: | 1-430 |
| Cow position: | chr5:53941714-53942133 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 295 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-430 |
| Cow position: | chr5:71133932-71133509 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 295 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-433 |
| Cow position: | chr5:9967724-9967303 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 290 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 4-428 |
| Cow position: | chr5:30234325-30233916 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 291 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 60, 13 |
| Conread position: | 9-165 |
| Cow position: | chr5:22847834-22847991 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 54, 91 |
| Conread position: | 12-428 |
| Cow position: | chr5:18892764-18893170 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 10, 121 |
| Conread position: | 12-428 |
| Cow position: | chr5:70712861-70713266 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 52, 10 |
| Conread position: | 24-428 |
| Cow position: | chr5:17873084-17873479 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 271 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 40, 143 |
| Conread position: | 24-428 |
| Cow position: | chr5:27385191-27384797 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 283 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 40, 7 |
| Conread position: | 24-429 |
| Cow position: | chr5:14896885-14897274 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 124, 34 |
| Conread position: | 33-165 |
| Cow position: | chr5:5943958-5944091 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 33-428 |
| Cow position: | chr5:63141853-63141468 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 32, 134 |
| Conread position: | 190-417 |
| Cow position: | chr5:54668601-54668833 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 80, 118 |
| Conread position: | 190-428 |
| Cow position: | chr5:64799661-64799908 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 12, 110 |
| Conread position: | 190-436 |
| Cow position: | chr5:13540664-13540920 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 78, 97 |
Show alignments to all cow chromosomes.