Cow genome map
| Conread name: | Tra1-TCH01A090068 |
| Conread position: | 1-165 |
| Cow position: | chr6:2982515-2982351 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr6:19041938-19042102 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr6:36675125-36674961 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr6:36924308-36924144 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 63, 20 |
| Conread position: | 1-165 |
| Cow position: | chr6:44691689-44691525 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 64, 24 |
| Conread position: | 1-165 |
| Cow position: | chr6:46533326-46533163 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr6:48025392-48025556 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr6:48724541-48724377 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chr6:50350352-50350514 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 64, 16 |
| Conread position: | 1-165 |
| Cow position: | chr6:52961952-52962111 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-166 |
| Cow position: | chr6:53430667-53430831 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-166 |
| Cow position: | chr6:55522487-55522322 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-166 |
| Cow position: | chr6:61409177-61409342 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-340 |
| Cow position: | chr6:15034926-15035261 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 169 |
| Conread position: | 1-375 |
| Cow position: | chr6:36923169-36923538 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 63, 20 |
| Conread position: | 1-417 |
| Cow position: | chr6:23898230-23898632 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 63, 25 |
| Conread position: | 1-426 |
| Cow position: | chr6:60865911-60866326 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 292 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 60, 21 |
| Conread position: | 1-428 |
| Cow position: | chr6:104253-104670 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr6:2597736-2597324 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 290 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr6:7527926-7528349 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 290 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 44, 16 |
| Conread position: | 1-428 |
| Cow position: | chr6:7870765-7871182 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 289 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr6:23212917-23212502 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 294 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 63, 16 |
| Conread position: | 1-428 |
| Cow position: | chr6:23904406-23904823 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr6:26245996-26245551 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr6:26939819-26939401 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 298 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 63, 16 |
| Conread position: | 1-428 |
| Cow position: | chr6:39448827-39449245 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 305 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 271, 18 |
| Conread position: | 1-428 |
| Cow position: | chr6:49756828-49756413 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 294 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr6:52418852-52418435 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 286 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chr6:59689379-59688970 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 290 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 1-428 |
| Cow position: | chr6:65680226-65679812 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 290 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-432 |
| Cow position: | chr6:19261278-19261704 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 295 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 1-434 |
| Cow position: | chr6:4149904-4149446 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 21 |
| Conread position: | 1-435 |
| Cow position: | chr6:2159283-2158857 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 286 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-446 |
| Cow position: | chr6:57793769-57794204 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 309 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 2-158 |
| Cow position: | chr6:5074942-5074786 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 13, 21 |
| Conread position: | 2-164 |
| Cow position: | chr6:67428856-67428697 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 62, 20 |
| Conread position: | 2-428 |
| Cow position: | chr6:44459984-44460399 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 291 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 62, 20 |
| Conread position: | 2-429 |
| Cow position: | chr6:66256220-66255794 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 290 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 62, 20 |
| Conread position: | 2-430 |
| Cow position: | chr6:32521916-32522342 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 293 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 63, 20 |
| Conread position: | 3-163 |
| Cow position: | chr6:54538664-54538823 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 61, 19 |
| Conread position: | 3-268 |
| Cow position: | chr6:16554852-16554606 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 57, 22 |
| Conread position: | 3-420 |
| Cow position: | chr6:42768594-42768985 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 278 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 227, 19 |
| Conread position: | 9-165 |
| Cow position: | chr6:61434792-61434949 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 9-429 |
| Cow position: | chr6:3661342-3660932 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 292 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 11-428 |
| Cow position: | chr6:49411761-49412178 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 276 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 53, 11 |
| Conread position: | 32-428 |
| Cow position: | chr6:55844068-55843684 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 33, 102 |
| Conread position: | 113-393 |
| Cow position: | chr6:61435215-61435490 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 33, 125 |
| Conread position: | 138-269 |
| Cow position: | chr6:69359865-69360001 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 190-428 |
| Cow position: | chr6:19042107-19042353 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 38, 33 |
| Conread position: | 190-428 |
| Cow position: | chr6:36924138-36923890 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 12, 110 |
Show alignments to all cow chromosomes.