Cow genome map
| Conread name: | Tra1-TCH01A090068 |
| Conread position: | 1-163 |
| Cow position: | chrX:35933744-35933580 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 60, 22 |
| Conread position: | 1-164 |
| Cow position: | chrX:25951333-25951170 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chrX:9313345-9313191 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-165 |
| Cow position: | chrX:15764575-15764409 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-165 |
| Cow position: | chrX:16902500-16902337 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 1-166 |
| Cow position: | chrX:16891386-16891546 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 1-166 |
| Cow position: | chrX:34443170-34443007 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 64, 16 |
| Conread position: | 1-166 |
| Cow position: | chrX:45419866-45420033 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 55, 17 |
| Conread position: | 1-166 |
| Cow position: | chrX:48236389-48236225 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 63, 20 |
| Conread position: | 1-220 |
| Cow position: | chrX:8448260-8448047 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 62, 21 |
| Conread position: | 1-417 |
| Cow position: | chrX:823870-823457 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 279 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 51, 21 |
| Conread position: | 1-417 |
| Cow position: | chrX:25272475-25272880 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 285 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-417 |
| Cow position: | chrX:39827582-39827984 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 63, 20 |
| Conread position: | 1-428 |
| Cow position: | chrX:109-524 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 296 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chrX:2915-2499 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 296 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 1-428 |
| Cow position: | chrX:833166-832750 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 293 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chrX:835118-834700 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 300 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 1-428 |
| Cow position: | chrX:23430348-23430767 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 298 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 60, 21 |
| Conread position: | 1-428 |
| Cow position: | chrX:27980809-27981226 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 293 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 66, 21 |
| Conread position: | 1-428 |
| Cow position: | chrX:28868512-28868926 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 292 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 63, 16 |
| Conread position: | 1-428 |
| Cow position: | chrX:32647440-32647023 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 293 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-428 |
| Cow position: | chrX:32754389-32753948 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 1-428 |
| Cow position: | chrX:42402827-42403241 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 289 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 63, 18 |
| Conread position: | 1-431 |
| Cow position: | chrX:4877-5303 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 299 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 64, 10 |
| Conread position: | 1-433 |
| Cow position: | chrX:44615709-44616132 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 292 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 2-165 |
| Cow position: | chrX:38749024-38749186 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 63, 19 |
| Conread position: | 2-166 |
| Cow position: | chrX:18434839-18434675 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 59, 20 |
| Conread position: | 9-166 |
| Cow position: | chrX:28874452-28874295 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 9-428 |
| Cow position: | chrX:32753533-32753125 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 284 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 11-445 |
| Cow position: | chrX:9099824-9099405 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 288 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 53, 11 |
| Conread position: | 12-165 |
| Cow position: | chrX:10749291-10749136 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 12-370 |
| Cow position: | chrX:29531358-29531009 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 159 |
| Conread position: | 22-270 |
| Cow position: | chrX:25220960-25220709 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 185 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 24-165 |
| Cow position: | chrX:9108450-9108308 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 24-426 |
| Cow position: | chrX:25266358-25266749 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 273 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 41, 73 |
| Conread position: | 32-166 |
| Cow position: | chrX:13831014-13830881 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 33, 103 |
| Conread position: | 190-426 |
| Cow position: | chrX:16795415-16795170 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 190-428 |
| Cow position: | chrX:13063932-13063693 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 128, 92 |
| Conread position: | 190-428 |
| Cow position: | chrX:40448201-40448443 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 90, 170 |
| Conread position: | 190-438 |
| Cow position: | chrX:36053754-36054010 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 80, 109 |
Show alignments to all cow chromosomes.