Cow genome map

Conread name: Tra1-TCH01B050021

Conread position: 40-245
Cow position: chr11:10620474-10620260 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 158
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 11, 0

Conread position: 56-228
Cow position: chr11:44575866-44575696 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 121
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 70, 0

Conread position: 56-228
Cow position: chr11:45434955-45435129 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 29, 85

Conread position: 57-228
Cow position: chr11:60143429-60143253 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 15, 159

Conread position: 70-277
Cow position: chr11:42160168-42159959 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 156
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 50, 9

Conread position: 70-282
Cow position: chr11:62789019-62789230 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 145
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 19, 161

Conread position: 76-228
Cow position: chr11:34121094-34121247 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 52, 20

Conread position: 76-278
Cow position: chr11:39060705-39060504 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 148
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 12, 52

Conread position: 76-292
Cow position: chr11:48295926-48296140 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 151
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 12, 128

Conread position: 77-220
Cow position: chr11:1779431-1779288 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 108
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 60, 112

Conread position: 77-294
Cow position: chr11:41293921-41293706 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 150
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 11, 57

Conread position: 79-295
Cow position: chr11:34646488-34646702 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 151
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 54, 156

Conread position: 80-226
Cow position: chr11:10213664-10213517 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 52, 0

Conread position: 80-228
Cow position: chr11:55494579-55494728 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 56, 0

Conread position: 80-228
Cow position: chr11:63469776-63469924 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 107
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 80-255
Cow position: chr11:20238571-20238754 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 144
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 9, 0

Conread position: 80-269
Cow position: chr11:39115393-39115582 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 141
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 9, 127

Conread position: 80-275
Cow position: chr11:3393310-3393111 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 136
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 80-281
Cow position: chr11:2907618-2907430 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 150
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 9, 56

Conread position: 80-281
Cow position: chr11:31410984-31410779 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 150
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 13, 156

Conread position: 80-281
Cow position: chr11:35684595-35684402 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 145
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 9, 53

Conread position: 80-292
Cow position: chr11:59702386-59702601 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 152
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 55, 185

Conread position: 80-302
Cow position: chr11:44031902-44032132 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 169
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 12, 170

Conread position: 82-230
Cow position: chr11:1849268-1849120 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 107
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 82-282
Cow position: chr11:40608693-40608496 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 142
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 39, 57

Conread position: 83-281
Cow position: chr11:39499258-39499456 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 146
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 46, 147

Conread position: 85-228
Cow position: chr11:70619948-70620093 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 45, 0

Conread position: 87-226
Cow position: chr11:11045125-11044986 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 46, 104

Conread position: 87-277
Cow position: chr11:17083402-17083212 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 136
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 50, 24

Conread position: 87-281
Cow position: chr11:17676462-17676274 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 39, 0

Conread position: 88-200
Cow position: chr11:16251337-16251223 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 95
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 41, 0

Conread position: 88-200
Cow position: chr11:55911725-55911613 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 89
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 88-225
Cow position: chr11:30954909-30955046 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 102
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 88-226
Cow position: chr11:83032591-83032727 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 103
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 88-228
Cow position: chr11:24937573-24937714 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 45, 0

Conread position: 88-230
Cow position: chr11:17036620-17036477 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 116
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 43, 0

Conread position: 88-233
Cow position: chr11:35803043-35803186 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 48, 113

Conread position: 88-240
Cow position: chr11:42793063-42792913 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 112
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 37, 0

Conread position: 88-245
Cow position: chr11:80923414-80923256 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 38, 114

Conread position: 88-257
Cow position: chr11:46580265-46580436 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 51, 152

Conread position: 88-261
Cow position: chr11:69392467-69392645 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 134
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 9, 165

Conread position: 88-269
Cow position: chr11:50778283-50778460 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 146, 46

Conread position: 88-274
Cow position: chr11:8428420-8428603 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 43, 57

Conread position: 88-274
Cow position: chr11:71390654-71390467 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 136
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 44, 142

Conread position: 88-275
Cow position: chr11:65767107-65767296 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 135
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 45, 178

Conread position: 88-276
Cow position: chr11:30830706-30830515 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 141
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 51, 180

Conread position: 88-276
Cow position: chr11:45646685-45646495 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 143
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 40, 122

Conread position: 88-276
Cow position: chr11:47772483-47772294 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 141
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 43, 159

Conread position: 88-278
Cow position: chr11:2917676-2917488 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 141
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 160, 48

Conread position: 88-278
Cow position: chr11:24599480-24599290 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 139
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 46, 142

Conread position: 88-278
Cow position: chr11:26845685-26845496 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 139
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 35, 48

Conread position: 88-278
Cow position: chr11:52380964-52380773 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 136
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 45, 172

Conread position: 88-280
Cow position: chr11:23128633-23128442 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 138
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 46, 143

Conread position: 88-281
Cow position: chr11:29960205-29960394 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 143
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 41, 114

Conread position: 88-281
Cow position: chr11:44636848-44636656 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 41, 144

Conread position: 88-281
Cow position: chr11:65762690-65762492 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 145
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 47, 149

Conread position: 88-281
Cow position: chr11:67615337-67615148 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 138
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 55, 27

Conread position: 88-281
Cow position: chr11:69075818-69076009 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 141
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 45, 94

Conread position: 88-281
Cow position: chr11:80564202-80564391 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 135
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 141, 0

Conread position: 88-282
Cow position: chr11:25386974-25387167 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 138
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 41, 146

Conread position: 88-282
Cow position: chr11:69119201-69119393 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 141
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 41, 142

Conread position: 88-283
Cow position: chr11:11558077-11558278 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 139
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 88-286
Cow position: chr11:1625314-1625121 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 138
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 42, 24

Conread position: 88-287
Cow position: chr11:47545040-47545235 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 149
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 37, 110

Conread position: 88-292
Cow position: chr11:6194115-6194314 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 145
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 28, 0

Conread position: 88-292
Cow position: chr11:62813040-62812840 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 145
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 41, 8

Conread position: 88-294
Cow position: chr11:37804646-37804442 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 144
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 51, 142

Conread position: 88-294
Cow position: chr11:48272107-48272312 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 147
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 46, 148

Conread position: 88-295
Cow position: chr11:49872977-49872774 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 146
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 45, 113

Conread position: 88-295
Cow position: chr11:63999180-63998977 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 148
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 38, 82

Conread position: 89-278
Cow position: chr11:23407372-23407563 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 135
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 51, 172

Conread position: 90-228
Cow position: chr11:21497433-21497571 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 17, 50

Conread position: 90-228
Cow position: chr11:48496682-48496544 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 82, 47

Conread position: 90-229
Cow position: chr11:80556132-80556269 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 38, 65

Conread position: 90-233
Cow position: chr11:27248404-27248544 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 103, 0

Conread position: 90-294
Cow position: chr11:28643996-28644199 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 144
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 46, 142

Conread position: 91-208
Cow position: chr11:20761759-20761876 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 91-252
Cow position: chr11:33341234-33341070 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 118
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 92-294
Cow position: chr11:33409347-33409149 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 148
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 151, 46

Conread position: 95-230
Cow position: chr11:82740424-82740560 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 97-228
Cow position: chr11:54218635-54218763 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 106
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 34, 0

Conread position: 97-245
Cow position: chr11:50152897-50152746 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 36, 0

Conread position: 97-255
Cow position: chr11:16342312-16342151 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 129
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 31, 0

Conread position: 97-281
Cow position: chr11:77319331-77319513 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 33, 138

Conread position: 98-226
Cow position: chr11:28168505-28168376 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 105
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 32, 47

Conread position: 98-294
Cow position: chr11:17721885-17721691 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 145
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 32, 133

Conread position: 102-245
Cow position: chr11:4637250-4637104 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 123-289
Cow position: chr11:36329091-36328923 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 109, 165

Show alignments to all cow chromosomes.