Cow genome map
| Conread name: | Tra1-TCH01B050021 |
| Conread position: | 28-228 |
| Cow position: | chr13:43480172-43479979 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 22, 34 |
| Conread position: | 50-228 |
| Cow position: | chr13:34555722-34555909 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 17, 132 |
| Conread position: | 51-273 |
| Cow position: | chr13:8524517-8524743 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 31, 203 |
| Conread position: | 51-294 |
| Cow position: | chr13:21275954-21275715 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 37, 80 |
| Conread position: | 56-228 |
| Cow position: | chr13:15144274-15144447 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 22, 31 |
| Conread position: | 56-228 |
| Cow position: | chr13:15903115-15902943 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 29, 43 |
| Conread position: | 56-278 |
| Cow position: | chr13:15288830-15289052 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 29, 145 |
| Conread position: | 56-278 |
| Cow position: | chr13:20784687-20784462 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 29, 179 |
| Conread position: | 56-281 |
| Cow position: | chr13:19279191-19278964 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 24, 133 |
| Conread position: | 56-281 |
| Cow position: | chr13:23479126-23478899 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 22, 178 |
| Conread position: | 56-281 |
| Cow position: | chr13:25817621-25817396 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 22, 155 |
| Conread position: | 57-228 |
| Cow position: | chr13:12045243-12045419 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 62-294 |
| Cow position: | chr13:15757207-15756972 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 10, 79 |
| Conread position: | 73-228 |
| Cow position: | chr13:24586118-24585966 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 15, 87 |
| Conread position: | 76-227 |
| Cow position: | chr13:47022433-47022285 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 76-292 |
| Cow position: | chr13:20666313-20666528 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 13, 129 |
| Conread position: | 77-281 |
| Cow position: | chr13:11460702-11460499 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 25, 55 |
| Conread position: | 77-292 |
| Cow position: | chr13:13320865-13320655 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 11, 49 |
| Conread position: | 79-222 |
| Cow position: | chr13:12619045-12619190 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 79-283 |
| Cow position: | chr13:31813946-31813742 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 19, 72 |
| Conread position: | 79-304 |
| Cow position: | chr13:54388950-54389172 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 10, 153 |
| Conread position: | 80-228 |
| Cow position: | chr13:48037689-48037542 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 20, 122 |
| Conread position: | 80-230 |
| Cow position: | chr13:890104-890252 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 80-281 |
| Cow position: | chr13:19610497-19610695 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 43, 123 |
| Conread position: | 84-228 |
| Cow position: | chr13:15233984-15233845 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 39, 53 |
| Conread position: | 85-281 |
| Cow position: | chr13:52057621-52057426 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 47, 139 |
| Conread position: | 86-276 |
| Cow position: | chr13:20217335-20217529 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 50, 179 |
| Conread position: | 87-228 |
| Cow position: | chr13:17292074-17292212 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 36, 103 |
| Conread position: | 87-252 |
| Cow position: | chr13:19320594-19320425 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 87-255 |
| Cow position: | chr13:20473623-20473792 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 147, 49 |
| Conread position: | 87-275 |
| Cow position: | chr13:15884961-15885148 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 52, 163 |
| Conread position: | 88-223 |
| Cow position: | chr13:34281734-34281603 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 88-228 |
| Cow position: | chr13:18181715-18181856 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 88-228 |
| Cow position: | chr13:21176264-21176403 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 88-228 |
| Cow position: | chr13:34263311-34263451 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 44, 28 |
| Conread position: | 88-228 |
| Cow position: | chr13:55674151-55674289 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 88-230 |
| Cow position: | chr13:45023154-45023292 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 88-270 |
| Cow position: | chr13:22085686-22085866 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 42, 141 |
| Conread position: | 88-277 |
| Cow position: | chr13:24369640-24369451 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 42, 49 |
| Conread position: | 88-279 |
| Cow position: | chr13:41806833-41806643 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 41, 143 |
| Conread position: | 88-281 |
| Cow position: | chr13:971835-972028 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 35, 117 |
| Conread position: | 88-281 |
| Cow position: | chr13:18172396-18172205 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 42, 141 |
| Conread position: | 88-281 |
| Cow position: | chr13:18197549-18197739 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 44, 71 |
| Conread position: | 88-281 |
| Cow position: | chr13:18696901-18696710 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 41, 145 |
| Conread position: | 88-281 |
| Cow position: | chr13:20314561-20314754 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 21, 159 |
| Conread position: | 88-281 |
| Cow position: | chr13:46329546-46329741 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 52, 172 |
| Conread position: | 88-281 |
| Cow position: | chr13:55316131-55316328 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 88-294 |
| Cow position: | chr13:17439712-17439912 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 172, 108 |
| Conread position: | 88-295 |
| Cow position: | chr13:2414086-2413884 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 163, 48 |
| Conread position: | 89-228 |
| Cow position: | chr13:54702244-54702105 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 89-272 |
| Cow position: | chr13:18058189-18058378 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 89-277 |
| Cow position: | chr13:23856269-23856083 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 44, 83 |
| Conread position: | 89-278 |
| Cow position: | chr13:8355262-8355078 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 90-226 |
| Cow position: | chr13:17114320-17114458 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 90-230 |
| Cow position: | chr13:15194676-15194818 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 90-268 |
| Cow position: | chr13:8374716-8374889 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 90-277 |
| Cow position: | chr13:35557049-35557242 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 34, 174 |
| Conread position: | 90-279 |
| Cow position: | chr13:20679395-20679207 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 158, 51 |
| Conread position: | 91-225 |
| Cow position: | chr13:8402111-8401977 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 42, 113 |
| Conread position: | 91-281 |
| Cow position: | chr13:14063464-14063654 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 48, 140 |
| Conread position: | 93-281 |
| Cow position: | chr13:20706153-20706336 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 148, 39 |
| Conread position: | 97-228 |
| Cow position: | chr13:17611501-17611633 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 103-228 |
| Cow position: | chr13:55494477-55494607 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 20, 0 |
Show alignments to all cow chromosomes.