Cow genome map
| Conread name: | Tra1-TCH01B050021 |
| Conread position: | 6-281 |
| Cow position: | chr16:20069674-20069949 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 11, 18 |
| Conread position: | 56-226 |
| Cow position: | chr16:4857209-4857037 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 22, 149 |
| Conread position: | 56-228 |
| Cow position: | chr16:39402112-39401947 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 16, 48 |
| Conread position: | 56-228 |
| Cow position: | chr16:52834997-52834821 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 8, 13 |
| Conread position: | 56-255 |
| Cow position: | chr16:27659857-27659650 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 32, 55 |
| Conread position: | 56-276 |
| Cow position: | chr16:5256886-5257111 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 29, 208 |
| Conread position: | 56-293 |
| Cow position: | chr16:36203731-36203491 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 16, 180 |
| Conread position: | 57-281 |
| Cow position: | chr16:18354061-18353839 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 15, 130 |
| Conread position: | 58-281 |
| Cow position: | chr16:11806564-11806789 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 27, 195 |
| Conread position: | 64-228 |
| Cow position: | chr16:31561656-31561822 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 19, 11 |
| Conread position: | 76-227 |
| Cow position: | chr16:50370511-50370660 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 76-228 |
| Cow position: | chr16:54579081-54579233 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 54, 115 |
| Conread position: | 76-255 |
| Cow position: | chr16:48398341-48398158 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 76-280 |
| Cow position: | chr16:33198523-33198323 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 56, 105 |
| Conread position: | 79-227 |
| Cow position: | chr16:10592351-10592497 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 44 |
| Conread position: | 80-228 |
| Cow position: | chr16:16570832-16570979 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 18, 118 |
| Conread position: | 80-228 |
| Cow position: | chr16:17135142-17134993 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 49, 29 |
| Conread position: | 80-228 |
| Cow position: | chr16:33704724-33704872 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 9, 81 |
| Conread position: | 80-268 |
| Cow position: | chr16:11135063-11134870 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 80-277 |
| Cow position: | chr16:26373029-26372837 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 152, 56 |
| Conread position: | 80-286 |
| Cow position: | chr16:48370032-48369831 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 9, 122 |
| Conread position: | 80-287 |
| Cow position: | chr16:39394488-39394696 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 15, 47 |
| Conread position: | 81-277 |
| Cow position: | chr16:4626473-4626271 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 18, 38 |
| Conread position: | 82-275 |
| Cow position: | chr16:42345686-42345500 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 85-283 |
| Cow position: | chr16:22919389-22919589 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 10, 70 |
| Conread position: | 87-228 |
| Cow position: | chr16:19047509-19047367 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 87-228 |
| Cow position: | chr16:41697159-41697025 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 87-281 |
| Cow position: | chr16:41578152-41578345 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 45, 58 |
| Conread position: | 87-295 |
| Cow position: | chr16:10032566-10032769 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 88-217 |
| Cow position: | chr16:7505015-7505145 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 88-225 |
| Cow position: | chr16:22124039-22123906 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 88-226 |
| Cow position: | chr16:2417662-2417524 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 88-227 |
| Cow position: | chr16:45731461-45731321 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 88-228 |
| Cow position: | chr16:11105480-11105621 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 88-228 |
| Cow position: | chr16:12060344-12060483 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 88-228 |
| Cow position: | chr16:17903722-17903578 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 88-228 |
| Cow position: | chr16:33054556-33054414 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 37, 51 |
| Conread position: | 88-228 |
| Cow position: | chr16:34220111-34220253 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 88-228 |
| Cow position: | chr16:45139599-45139734 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 88-230 |
| Cow position: | chr16:25386902-25387042 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 41, 100 |
| Conread position: | 88-272 |
| Cow position: | chr16:9905018-9905204 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 142, 48 |
| Conread position: | 88-274 |
| Cow position: | chr16:50873237-50873059 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 88-275 |
| Cow position: | chr16:29527751-29527945 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 88-280 |
| Cow position: | chr16:32302077-32301890 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 113, 43 |
| Conread position: | 88-281 |
| Cow position: | chr16:25170321-25170511 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 160, 53 |
| Conread position: | 88-281 |
| Cow position: | chr16:40333399-40333209 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 48, 94 |
| Conread position: | 88-281 |
| Cow position: | chr16:40514553-40514365 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 160, 39 |
| Conread position: | 88-281 |
| Cow position: | chr16:40562158-40562348 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 40, 142 |
| Conread position: | 88-281 |
| Cow position: | chr16:48494628-48494437 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 45, 147 |
| Conread position: | 88-284 |
| Cow position: | chr16:9973571-9973379 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 42, 56 |
| Conread position: | 88-294 |
| Cow position: | chr16:5363823-5364031 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 54, 151 |
| Conread position: | 88-294 |
| Cow position: | chr16:47964888-47964689 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 88-294 |
| Cow position: | chr16:48340769-48340569 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 43, 145 |
| Conread position: | 89-228 |
| Cow position: | chr16:33226610-33226472 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 89-275 |
| Cow position: | chr16:9552989-9553171 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 148, 38 |
| Conread position: | 89-277 |
| Cow position: | chr16:25839547-25839737 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 39, 171 |
| Conread position: | 89-281 |
| Cow position: | chr16:34754032-34753843 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 171, 140 |
| Conread position: | 89-292 |
| Cow position: | chr16:30305886-30305686 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 35, 113 |
| Conread position: | 90-281 |
| Cow position: | chr16:45677907-45678096 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 90-281 |
| Cow position: | chr16:46433400-46433207 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 48, 143 |
| Conread position: | 90-283 |
| Cow position: | chr16:17288876-17289067 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 41, 48 |
| Conread position: | 90-295 |
| Cow position: | chr16:23729997-23729790 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 41, 157 |
| Conread position: | 91-228 |
| Cow position: | chr16:56231757-56231894 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 42, 17 |
| Conread position: | 91-230 |
| Cow position: | chr16:26649699-26649560 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 91-275 |
| Cow position: | chr16:496445-496263 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 139, 42 |
| Conread position: | 91-281 |
| Cow position: | chr16:17945450-17945640 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 42, 138 |
| Conread position: | 91-294 |
| Cow position: | chr16:45121969-45122165 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 92-281 |
| Cow position: | chr16:42977394-42977583 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 42, 134 |
| Conread position: | 92-281 |
| Cow position: | chr16:47820498-47820686 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 41, 106 |
| Conread position: | 93-223 |
| Cow position: | chr16:52789984-52790117 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 93-227 |
| Cow position: | chr16:13689597-13689732 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 93-295 |
| Cow position: | chr16:8737997-8738197 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 152, 135 |
| Conread position: | 94-281 |
| Cow position: | chr16:20824417-20824595 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 179, 18 |
| Conread position: | 95-283 |
| Cow position: | chr16:45294477-45294666 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 46, 127 |
| Conread position: | 97-281 |
| Cow position: | chr16:12320156-12320341 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 36, 133 |
| Conread position: | 100-227 |
| Cow position: | chr16:21039964-21040093 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 29, 0 |
Show alignments to all cow chromosomes.