Cow genome map
| Conread name: | Tra1-TCH01B050021 |
| Conread position: | 56-269 |
| Cow position: | chr17:26818522-26818314 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 22, 40 |
| Conread position: | 56-281 |
| Cow position: | chr17:32989409-32989633 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 29, 99 |
| Conread position: | 56-281 |
| Cow position: | chr17:32993691-32993467 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 29, 99 |
| Conread position: | 57-280 |
| Cow position: | chr17:21922693-21922478 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 76-228 |
| Cow position: | chr17:21114998-21114847 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 57, 37 |
| Conread position: | 76-294 |
| Cow position: | chr17:18592396-18592617 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 65, 22 |
| Conread position: | 76-294 |
| Cow position: | chr17:32138467-32138255 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 77-281 |
| Cow position: | chr17:17059381-17059580 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 54, 26 |
| Conread position: | 78-281 |
| Cow position: | chr17:6318911-6318710 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 10, 61 |
| Conread position: | 79-277 |
| Cow position: | chr17:40638907-40639100 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 9, 47 |
| Conread position: | 80-226 |
| Cow position: | chr17:38647018-38647166 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 80-228 |
| Cow position: | chr17:3577494-3577646 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 80-228 |
| Cow position: | chr17:21039522-21039664 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 80-272 |
| Cow position: | chr17:32471826-32471624 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 80-283 |
| Cow position: | chr17:5423112-5422910 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 50, 151 |
| Conread position: | 80-313 |
| Cow position: | chr17:12591125-12591363 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 8, 157 |
| Conread position: | 81-227 |
| Cow position: | chr17:25541861-25541711 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 82-277 |
| Cow position: | chr17:33288697-33288500 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 58, 180 |
| Conread position: | 84-295 |
| Cow position: | chr17:4225531-4225332 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 87-230 |
| Cow position: | chr17:28285063-28284919 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 47, 5 |
| Conread position: | 88-226 |
| Cow position: | chr17:21478954-21478817 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 48, 114 |
| Conread position: | 88-227 |
| Cow position: | chr17:12536500-12536359 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 88-228 |
| Cow position: | chr17:18109117-18108980 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 41, 47 |
| Conread position: | 88-228 |
| Cow position: | chr17:21003860-21003722 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 40, 113 |
| Conread position: | 88-228 |
| Cow position: | chr17:25901165-25901307 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 88-228 |
| Cow position: | chr17:32273718-32273580 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 73, 31 |
| Conread position: | 88-228 |
| Cow position: | chr17:36330990-36330851 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 88-230 |
| Cow position: | chr17:8948996-8948855 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 47, 8 |
| Conread position: | 88-256 |
| Cow position: | chr17:33658102-33657932 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 88-277 |
| Cow position: | chr17:908711-908894 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 88-277 |
| Cow position: | chr17:32333124-32332935 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 60, 43 |
| Conread position: | 88-278 |
| Cow position: | chr17:9824637-9824825 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 62, 43 |
| Conread position: | 88-278 |
| Cow position: | chr17:24587590-24587781 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 40, 172 |
| Conread position: | 88-279 |
| Cow position: | chr17:5372561-5372372 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 52, 142 |
| Conread position: | 88-281 |
| Cow position: | chr17:1410271-1410080 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 55, 46 |
| Conread position: | 88-281 |
| Cow position: | chr17:25800914-25800726 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 102, 43 |
| Conread position: | 88-281 |
| Cow position: | chr17:33155187-33154996 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 146, 80 |
| Conread position: | 88-288 |
| Cow position: | chr17:6329082-6329279 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 43, 47 |
| Conread position: | 88-294 |
| Cow position: | chr17:15340785-15340582 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 96, 48 |
| Conread position: | 88-294 |
| Cow position: | chr17:27203075-27202876 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 194, 48 |
| Conread position: | 89-255 |
| Cow position: | chr17:3503550-3503717 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 143, 89 |
| Conread position: | 89-294 |
| Cow position: | chr17:21325302-21325506 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 140, 20 |
| Conread position: | 90-266 |
| Cow position: | chr17:11368881-11368703 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 42, 133 |
| Conread position: | 90-272 |
| Cow position: | chr17:22017117-22016932 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 90-280 |
| Cow position: | chr17:31037410-31037220 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 41, 140 |
| Conread position: | 90-281 |
| Cow position: | chr17:20990224-20990033 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 41, 12 |
| Conread position: | 90-281 |
| Cow position: | chr17:23516972-23516786 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 90-295 |
| Cow position: | chr17:11664618-11664407 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 91-228 |
| Cow position: | chr17:24824213-24824349 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 91-277 |
| Cow position: | chr17:33933777-33933591 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 44, 150 |
| Conread position: | 91-281 |
| Cow position: | chr17:17044362-17044176 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 52, 40 |
| Conread position: | 91-281 |
| Cow position: | chr17:34791095-34790907 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 100, 151 |
| Conread position: | 93-233 |
| Cow position: | chr17:29995465-29995324 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 97-304 |
| Cow position: | chr17:12959082-12959289 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 40, 22 |
| Conread position: | 98-281 |
| Cow position: | chr17:12325785-12325608 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 143, 36 |
| Conread position: | 98-281 |
| Cow position: | chr17:18848183-18847995 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 29, 179 |
| Conread position: | 98-292 |
| Cow position: | chr17:1634517-1634324 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 43, 149 |
| Conread position: | 102-278 |
| Cow position: | chr17:11478747-11478927 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 29, 160 |
| Conread position: | 108-228 |
| Cow position: | chr17:37341053-37340930 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 127-295 |
| Cow position: | chr17:43315280-43315120 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 163, 49 |
Show alignments to all cow chromosomes.