Cow genome map
| Conread name: | Tra1-TCH01B050021 |
| Conread position: | 6-282 |
| Cow position: | chr18:23630803-23630523 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 33, 6 |
| Conread position: | 7-228 |
| Cow position: | chr18:22569255-22569033 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 43, 21 |
| Conread position: | 52-228 |
| Cow position: | chr18:11684838-11685015 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 36, 26 |
| Conread position: | 56-230 |
| Cow position: | chr18:30794288-30794461 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 29, 56 |
| Conread position: | 62-208 |
| Cow position: | chr18:52403105-52402954 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 76-229 |
| Cow position: | chr18:45570893-45571047 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 15, 136 |
| Conread position: | 76-277 |
| Cow position: | chr18:31711687-31711477 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 76-279 |
| Cow position: | chr18:35535270-35535065 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 19, 158 |
| Conread position: | 76-281 |
| Cow position: | chr18:50082371-50082174 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 12, 53 |
| Conread position: | 76-293 |
| Cow position: | chr18:10891394-10891612 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 9, 45 |
| Conread position: | 76-294 |
| Cow position: | chr18:49038340-49038558 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 12, 156 |
| Conread position: | 77-281 |
| Cow position: | chr18:11790805-11791004 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 54, 124 |
| Conread position: | 79-228 |
| Cow position: | chr18:33299785-33299937 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 80-227 |
| Cow position: | chr18:2146701-2146547 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 80-277 |
| Cow position: | chr18:1954704-1954509 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 55, 46 |
| Conread position: | 80-281 |
| Cow position: | chr18:47511890-47512089 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 12, 25 |
| Conread position: | 80-289 |
| Cow position: | chr18:55505292-55505496 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 9, 56 |
| Conread position: | 81-253 |
| Cow position: | chr18:29958272-29958108 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 84-274 |
| Cow position: | chr18:4884630-4884440 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 18, 129 |
| Conread position: | 85-228 |
| Cow position: | chr18:28930748-28930603 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 86-277 |
| Cow position: | chr18:20798212-20798407 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 42, 149 |
| Conread position: | 87-227 |
| Cow position: | chr18:34220028-34219891 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 87-240 |
| Cow position: | chr18:29991620-29991465 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 41, 139 |
| Conread position: | 87-272 |
| Cow position: | chr18:55000850-55000665 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 43, 136 |
| Conread position: | 88-199 |
| Cow position: | chr18:44549020-44548908 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 88-218 |
| Cow position: | chr18:33407510-33407640 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 88-227 |
| Cow position: | chr18:29356732-29356592 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 88-230 |
| Cow position: | chr18:20126200-20126340 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 48, 20 |
| Conread position: | 88-252 |
| Cow position: | chr18:11313044-11312877 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 40, 121 |
| Conread position: | 88-255 |
| Cow position: | chr18:9365811-9365983 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 88-255 |
| Cow position: | chr18:18592370-18592535 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 146, 48 |
| Conread position: | 88-264 |
| Cow position: | chr18:44483877-44483701 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 144, 30 |
| Conread position: | 88-274 |
| Cow position: | chr18:10575997-10576187 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 38, 150 |
| Conread position: | 88-277 |
| Cow position: | chr18:12242169-12242358 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 51, 109 |
| Conread position: | 88-277 |
| Cow position: | chr18:48713444-48713634 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 41, 49 |
| Conread position: | 88-278 |
| Cow position: | chr18:6309976-6310164 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 49, 31 |
| Conread position: | 88-278 |
| Cow position: | chr18:51594908-51594721 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 144, 12 |
| Conread position: | 88-281 |
| Cow position: | chr18:20641594-20641413 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 88-281 |
| Cow position: | chr18:33896535-33896333 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 40, 167 |
| Conread position: | 88-281 |
| Cow position: | chr18:39875364-39875177 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 42, 56 |
| Conread position: | 88-294 |
| Cow position: | chr18:22055985-22055777 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 21, 118 |
| Conread position: | 88-294 |
| Cow position: | chr18:25647357-25647151 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 43, 115 |
| Conread position: | 88-294 |
| Cow position: | chr18:49841173-49841373 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 57, 111 |
| Conread position: | 88-295 |
| Cow position: | chr18:34834385-34834590 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 15, 85 |
| Conread position: | 89-226 |
| Cow position: | chr18:16686441-16686304 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 89-269 |
| Cow position: | chr18:49015023-49015200 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 44, 8 |
| Conread position: | 89-294 |
| Cow position: | chr18:28658013-28657815 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 90-230 |
| Cow position: | chr18:42479691-42479551 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 36, 47 |
| Conread position: | 90-278 |
| Cow position: | chr18:8171189-8171003 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 151, 46 |
| Conread position: | 90-278 |
| Cow position: | chr18:38686986-38687163 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 144, 40 |
| Conread position: | 91-227 |
| Cow position: | chr18:43797056-43796923 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 91-228 |
| Cow position: | chr18:5578204-5578340 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 40, 86 |
| Conread position: | 91-278 |
| Cow position: | chr18:1571339-1571154 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 143, 89 |
| Conread position: | 92-228 |
| Cow position: | chr18:10977314-10977178 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 38, 106 |
| Conread position: | 92-286 |
| Cow position: | chr18:8299914-8300109 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 48, 131 |
| Conread position: | 92-302 |
| Cow position: | chr18:19619850-19620053 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 142, 32 |
| Conread position: | 94-228 |
| Cow position: | chr18:15880947-15880811 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 98-230 |
| Cow position: | chr18:32189607-32189472 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 103-295 |
| Cow position: | chr18:42954157-42953964 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 27, 145 |
| Conread position: | 110-294 |
| Cow position: | chr18:52413879-52414063 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 19, 142 |
| Conread position: | 122-277 |
| Cow position: | chr18:23505257-23505412 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 9, 108 |
Show alignments to all cow chromosomes.