Cow genome map
| Conread name: | Tra1-TCH01B050021 |
| Conread position: | 19-280 |
| Cow position: | chr20:14620411-14620144 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 20, 12 |
| Conread position: | 31-216 |
| Cow position: | chr20:7384345-7384167 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 97, 17 |
| Conread position: | 57-294 |
| Cow position: | chr20:6248665-6248429 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 28, 173 |
| Conread position: | 76-228 |
| Cow position: | chr20:8547020-8547174 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 9, 139 |
| Conread position: | 76-250 |
| Cow position: | chr20:3255002-3255169 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 158, 54 |
| Conread position: | 78-274 |
| Cow position: | chr20:28605172-28605365 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 136, 16 |
| Conread position: | 79-228 |
| Cow position: | chr20:14806845-14806996 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 79-228 |
| Cow position: | chr20:39398445-39398590 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 9, 54 |
| Conread position: | 80-215 |
| Cow position: | chr20:35354859-35354726 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 80-217 |
| Cow position: | chr20:21204320-21204456 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 9, 37 |
| Conread position: | 80-228 |
| Cow position: | chr20:19363403-19363253 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 80-244 |
| Cow position: | chr20:3607002-3606834 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 13, 122 |
| Conread position: | 80-255 |
| Cow position: | chr20:23792570-23792742 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 18, 38 |
| Conread position: | 80-277 |
| Cow position: | chr20:33363477-33363672 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 51, 151 |
| Conread position: | 80-294 |
| Cow position: | chr20:22030280-22030493 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 9, 152 |
| Conread position: | 81-275 |
| Cow position: | chr20:22978288-22978483 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 13, 55 |
| Conread position: | 87-228 |
| Cow position: | chr20:25162159-25162016 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 87-255 |
| Cow position: | chr20:24069773-24069944 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 87-283 |
| Cow position: | chr20:8556301-8556106 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 43, 65 |
| Conread position: | 88-228 |
| Cow position: | chr20:11542313-11542179 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 88-228 |
| Cow position: | chr20:15548930-15548787 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 88-228 |
| Cow position: | chr20:39266988-39266849 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 43, 66 |
| Conread position: | 88-255 |
| Cow position: | chr20:8578218-8578387 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 35, 50 |
| Conread position: | 88-256 |
| Cow position: | chr20:31740251-31740083 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 42, 142 |
| Conread position: | 88-277 |
| Cow position: | chr20:7738256-7738072 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 144, 31 |
| Conread position: | 88-277 |
| Cow position: | chr20:28982669-28982857 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 42, 111 |
| Conread position: | 88-279 |
| Cow position: | chr20:38768486-38768304 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 88-281 |
| Cow position: | chr20:398334-398148 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 38, 17 |
| Conread position: | 88-281 |
| Cow position: | chr20:9412459-9412647 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 42, 17 |
| Conread position: | 88-284 |
| Cow position: | chr20:18320821-18320631 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 49, 59 |
| Conread position: | 88-294 |
| Cow position: | chr20:38089882-38090085 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 172, 146 |
| Conread position: | 89-228 |
| Cow position: | chr20:8702946-8702808 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 42, 92 |
| Conread position: | 90-228 |
| Cow position: | chr20:28441301-28441436 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 90-272 |
| Cow position: | chr20:6358587-6358769 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 33, 148 |
| Conread position: | 90-278 |
| Cow position: | chr20:38514754-38514937 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 160, 28 |
| Conread position: | 90-279 |
| Cow position: | chr20:18379348-18379537 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 38, 133 |
| Conread position: | 90-282 |
| Cow position: | chr20:12420647-12420458 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 151, 129 |
| Conread position: | 91-255 |
| Cow position: | chr20:20203189-20203356 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 91-255 |
| Cow position: | chr20:32463548-32463386 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 143, 92 |
| Conread position: | 91-281 |
| Cow position: | chr20:12581983-12581796 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 39, 138 |
| Conread position: | 92-255 |
| Cow position: | chr20:17100335-17100500 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 37, 110 |
| Conread position: | 92-282 |
| Cow position: | chr20:30888007-30888195 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 83, 33 |
| Conread position: | 100-279 |
| Cow position: | chr20:5702704-5702881 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 14, 130 |
| Conread position: | 101-228 |
| Cow position: | chr20:1009722-1009597 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 109-277 |
| Cow position: | chr20:25009638-25009473 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 125, 23 |
| Conread position: | 109-281 |
| Cow position: | chr20:32847333-32847504 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 24, 121 |
Show alignments to all cow chromosomes.