Cow genome map
| Conread name: | Tra1-TCH01B050021 |
| Conread position: | 41-226 |
| Cow position: | chr21:19363516-19363332 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 6, 20 |
| Conread position: | 44-228 |
| Cow position: | chr21:641528-641717 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 56-228 |
| Cow position: | chr21:29214201-29214030 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 21, 58 |
| Conread position: | 56-281 |
| Cow position: | chr21:12801797-12801569 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 16, 178 |
| Conread position: | 76-228 |
| Cow position: | chr21:297729-297884 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 76-228 |
| Cow position: | chr21:8426423-8426576 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 24, 70 |
| Conread position: | 76-228 |
| Cow position: | chr21:18842260-18842107 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 76-228 |
| Cow position: | chr21:38121076-38121231 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 76-294 |
| Cow position: | chr21:37299439-37299657 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 52, 20 |
| Conread position: | 80-208 |
| Cow position: | chr21:37479934-37480065 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 80-228 |
| Cow position: | chr21:11644989-11644836 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 80-228 |
| Cow position: | chr21:13488503-13488657 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 80-228 |
| Cow position: | chr21:46264153-46264300 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 9, 73 |
| Conread position: | 80-277 |
| Cow position: | chr21:45262830-45262628 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 80-281 |
| Cow position: | chr21:29014579-29014378 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 54, 73 |
| Conread position: | 80-291 |
| Cow position: | chr21:20260340-20260120 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 80-294 |
| Cow position: | chr21:10538269-10538062 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 80-295 |
| Cow position: | chr21:24858296-24858509 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 50, 60 |
| Conread position: | 81-249 |
| Cow position: | chr21:674668-674836 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 84-281 |
| Cow position: | chr21:829225-829029 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 50, 150 |
| Conread position: | 87-293 |
| Cow position: | chr21:30980588-30980386 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 88-224 |
| Cow position: | chr21:17856533-17856670 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 88-230 |
| Cow position: | chr21:30222334-30222477 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 88-230 |
| Cow position: | chr21:42540231-42540090 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 43, 9 |
| Conread position: | 88-272 |
| Cow position: | chr21:5392549-5392357 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 88-272 |
| Cow position: | chr21:34654067-34654253 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 144, 14 |
| Conread position: | 88-278 |
| Cow position: | chr21:802316-802137 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 144, 33 |
| Conread position: | 88-278 |
| Cow position: | chr21:28030279-28030468 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 144, 111 |
| Conread position: | 88-281 |
| Cow position: | chr21:11740130-11739940 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 45, 135 |
| Conread position: | 88-281 |
| Cow position: | chr21:29069338-29069146 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 51, 143 |
| Conread position: | 88-281 |
| Cow position: | chr21:33982815-33982629 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 153, 45 |
| Conread position: | 88-281 |
| Cow position: | chr21:42135629-42135436 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 40, 164 |
| Conread position: | 88-283 |
| Cow position: | chr21:29484970-29485169 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 46, 115 |
| Conread position: | 88-286 |
| Cow position: | chr21:724895-724703 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 53, 110 |
| Conread position: | 88-292 |
| Cow position: | chr21:47465130-47464927 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 47, 136 |
| Conread position: | 88-294 |
| Cow position: | chr21:32339746-32339547 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 181, 46 |
| Conread position: | 88-302 |
| Cow position: | chr21:4280682-4280469 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 51, 58 |
| Conread position: | 89-226 |
| Cow position: | chr21:44515255-44515392 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 90-228 |
| Cow position: | chr21:16187815-16187677 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 45, 8 |
| Conread position: | 90-228 |
| Cow position: | chr21:20183064-20183201 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 90-269 |
| Cow position: | chr21:30607096-30606916 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 46, 165 |
| Conread position: | 90-274 |
| Cow position: | chr21:28919531-28919346 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 91-276 |
| Cow position: | chr21:36297484-36297674 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 94-277 |
| Cow position: | chr21:19240880-19240691 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 97-228 |
| Cow position: | chr21:32559361-32559235 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 97-228 |
| Cow position: | chr21:46599359-46599491 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 97-228 |
| Cow position: | chr21:47160217-47160348 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 36, 12 |
| Conread position: | 97-281 |
| Cow position: | chr21:643324-643504 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 22, 40 |
| Conread position: | 100-268 |
| Cow position: | chr21:12104367-12104534 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 97, 150 |
| Conread position: | 107-292 |
| Cow position: | chr21:19360167-19359985 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 108-294 |
| Cow position: | chr21:36682332-36682518 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 12, 126 |
| Conread position: | 140-309 |
| Cow position: | chr21:33210230-33210392 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 89, 0 |
Show alignments to all cow chromosomes.