Cow genome map
| Conread name: | Tra1-TCH01B050021 |
| Conread position: | 52-281 |
| Cow position: | chr22:6327888-6327654 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 27, 203 |
| Conread position: | 53-281 |
| Cow position: | chr22:10532389-10532613 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 25, 89 |
| Conread position: | 56-281 |
| Cow position: | chr22:34441749-34441516 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 16, 199 |
| Conread position: | 57-285 |
| Cow position: | chr22:43131669-43131441 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 15, 175 |
| Conread position: | 73-283 |
| Cow position: | chr22:1659069-1659281 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 15, 23 |
| Conread position: | 76-255 |
| Cow position: | chr22:3317030-3317212 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 12, 54 |
| Conread position: | 76-276 |
| Cow position: | chr22:31646401-31646601 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 62, 155 |
| Conread position: | 77-277 |
| Cow position: | chr22:1871006-1871209 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 18, 178 |
| Conread position: | 77-278 |
| Cow position: | chr22:8324154-8324348 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 50 |
| Conread position: | 79-226 |
| Cow position: | chr22:3993525-3993671 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 9, 57 |
| Conread position: | 79-228 |
| Cow position: | chr22:6215646-6215493 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 80-228 |
| Cow position: | chr22:14882201-14882053 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 121 |
| Conread position: | 80-228 |
| Cow position: | chr22:25743036-25742886 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 9, 20 |
| Conread position: | 80-228 |
| Cow position: | chr22:38439242-38439094 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 45, 29 |
| Conread position: | 80-233 |
| Cow position: | chr22:34632051-34632203 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 12, 64 |
| Conread position: | 80-245 |
| Cow position: | chr22:22160639-22160808 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 80-273 |
| Cow position: | chr22:4011098-4011294 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 9, 39 |
| Conread position: | 80-281 |
| Cow position: | chr22:4137735-4137535 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 154, 56 |
| Conread position: | 80-281 |
| Cow position: | chr22:9372436-9372634 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 187, 149 |
| Conread position: | 81-280 |
| Cow position: | chr22:17950052-17949860 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 81-281 |
| Cow position: | chr22:17852720-17852524 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 11, 118 |
| Conread position: | 84-228 |
| Cow position: | chr22:42617918-42618063 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 84-278 |
| Cow position: | chr22:26706890-26706698 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 10, 52 |
| Conread position: | 84-286 |
| Cow position: | chr22:17152599-17152802 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 146, 48 |
| Conread position: | 85-217 |
| Cow position: | chr22:10122298-10122431 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 87-228 |
| Cow position: | chr22:4645696-4645836 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 87-243 |
| Cow position: | chr22:41979920-41979766 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 145, 9 |
| Conread position: | 88-224 |
| Cow position: | chr22:15039258-15039123 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 129, 9 |
| Conread position: | 88-228 |
| Cow position: | chr22:845825-845966 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 88-228 |
| Cow position: | chr22:864593-864453 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 45, 114 |
| Conread position: | 88-228 |
| Cow position: | chr22:7882477-7882615 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 45, 113 |
| Conread position: | 88-228 |
| Cow position: | chr22:16094978-16094840 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 88-228 |
| Cow position: | chr22:30699102-30699244 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 88-230 |
| Cow position: | chr22:26141200-26141340 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 47, 93 |
| Conread position: | 88-252 |
| Cow position: | chr22:12686753-12686597 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 144, 12 |
| Conread position: | 88-255 |
| Cow position: | chr22:9283675-9283506 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 88-267 |
| Cow position: | chr22:21393395-21393215 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 120, 167 |
| Conread position: | 88-274 |
| Cow position: | chr22:13957723-13957531 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 32, 53 |
| Conread position: | 88-275 |
| Cow position: | chr22:12803463-12803275 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 41, 174 |
| Conread position: | 88-278 |
| Cow position: | chr22:2623595-2623409 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 141, 88 |
| Conread position: | 88-278 |
| Cow position: | chr22:4315552-4315742 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 47, 112 |
| Conread position: | 88-279 |
| Cow position: | chr22:14214439-14214253 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 146, 44 |
| Conread position: | 88-281 |
| Cow position: | chr22:1025811-1026003 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 32, 143 |
| Conread position: | 88-281 |
| Cow position: | chr22:4017401-4017586 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 88-281 |
| Cow position: | chr22:4119641-4119449 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 13, 143 |
| Conread position: | 88-281 |
| Cow position: | chr22:4563284-4563476 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 10, 143 |
| Conread position: | 88-287 |
| Cow position: | chr22:5616232-5616420 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 88-291 |
| Cow position: | chr22:21502667-21502867 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 34, 10 |
| Conread position: | 88-294 |
| Cow position: | chr22:10553761-10553559 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 88-294 |
| Cow position: | chr22:21295802-21295599 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 52, 114 |
| Conread position: | 88-294 |
| Cow position: | chr22:34104751-34104546 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 46, 163 |
| Conread position: | 88-295 |
| Cow position: | chr22:18021105-18020907 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 89-228 |
| Cow position: | chr22:590262-590402 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 89-228 |
| Cow position: | chr22:12157918-12157781 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 44, 23 |
| Conread position: | 89-277 |
| Cow position: | chr22:25387247-25387439 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 44, 174 |
| Conread position: | 89-282 |
| Cow position: | chr22:10314999-10315192 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 57, 115 |
| Conread position: | 90-207 |
| Cow position: | chr22:24903515-24903631 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 91-258 |
| Cow position: | chr22:10631311-10631480 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 91-272 |
| Cow position: | chr22:8481570-8481755 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 50, 34 |
| Conread position: | 94-281 |
| Cow position: | chr22:4061016-4060834 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 94-295 |
| Cow position: | chr22:9127336-9127533 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 34, 57 |
| Conread position: | 98-228 |
| Cow position: | chr22:13300345-13300474 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 98-255 |
| Cow position: | chr22:15568084-15567924 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 31, 62 |
Show alignments to all cow chromosomes.