Cow genome map
| Conread name: | Tra1-TCH01B050021 |
| Conread position: | 50-278 |
| Cow position: | chr28:4070857-4071087 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 13, 78 |
| Conread position: | 50-281 |
| Cow position: | chr28:10589130-10588901 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 39, 181 |
| Conread position: | 51-281 |
| Cow position: | chr28:3275387-3275612 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 12, 40 |
| Conread position: | 52-219 |
| Cow position: | chr28:7751409-7751239 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 20, 149 |
| Conread position: | 56-281 |
| Cow position: | chr28:33884300-33884522 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 22, 99 |
| Conread position: | 56-294 |
| Cow position: | chr28:16346635-16346399 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 5, 156 |
| Conread position: | 56-295 |
| Cow position: | chr28:6971452-6971213 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 32, 176 |
| Conread position: | 76-228 |
| Cow position: | chr28:4158875-4159026 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 76-228 |
| Cow position: | chr28:19564311-19564157 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 76-230 |
| Cow position: | chr28:2960915-2960757 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 76-277 |
| Cow position: | chr28:21844876-21845078 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 52, 83 |
| Conread position: | 76-278 |
| Cow position: | chr28:11752224-11752021 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 12, 157 |
| Conread position: | 79-228 |
| Cow position: | chr28:25128805-25128957 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 9, 126 |
| Conread position: | 79-281 |
| Cow position: | chr28:4834922-4834720 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 51, 41 |
| Conread position: | 79-292 |
| Cow position: | chr28:24966306-24966519 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 9, 93 |
| Conread position: | 80-228 |
| Cow position: | chr28:15043939-15043791 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 49, 125 |
| Conread position: | 80-272 |
| Cow position: | chr28:7619230-7619029 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 80-272 |
| Cow position: | chr28:13474223-13474420 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 14, 66 |
| Conread position: | 80-278 |
| Cow position: | chr28:16246146-16245944 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 14, 126 |
| Conread position: | 80-281 |
| Cow position: | chr28:5204115-5204316 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 9, 152 |
| Conread position: | 81-295 |
| Cow position: | chr28:5684632-5684834 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 88-219 |
| Cow position: | chr28:8787472-8787602 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 37, 65 |
| Conread position: | 88-227 |
| Cow position: | chr28:5128799-5128659 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 88-228 |
| Cow position: | chr28:5139064-5138920 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 88-228 |
| Cow position: | chr28:8022177-8022032 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 44, 128 |
| Conread position: | 88-228 |
| Cow position: | chr28:11884587-11884450 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 88-228 |
| Cow position: | chr28:12363228-12363086 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 88-268 |
| Cow position: | chr28:11426609-11426425 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 146, 58 |
| Conread position: | 88-269 |
| Cow position: | chr28:2862798-2862981 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 44, 25 |
| Conread position: | 88-272 |
| Cow position: | chr28:26220188-26220377 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 88-280 |
| Cow position: | chr28:8140415-8140602 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 88-281 |
| Cow position: | chr28:3492852-3492663 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 35, 49 |
| Conread position: | 88-281 |
| Cow position: | chr28:3914644-3914838 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 47, 145 |
| Conread position: | 88-281 |
| Cow position: | chr28:4016465-4016652 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 88-282 |
| Cow position: | chr28:12070168-12070353 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 43, 10 |
| Conread position: | 88-295 |
| Cow position: | chr28:3740813-3741011 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 181, 46 |
| Conread position: | 88-295 |
| Cow position: | chr28:21868388-21868591 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 88-304 |
| Cow position: | chr28:22345952-22346167 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 48, 7 |
| Conread position: | 89-281 |
| Cow position: | chr28:4013020-4013205 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 89-295 |
| Cow position: | chr28:5437154-5436952 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 44, 134 |
| Conread position: | 90-205 |
| Cow position: | chr28:5904666-5904780 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 91 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 90-226 |
| Cow position: | chr28:7549125-7548989 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 90-269 |
| Cow position: | chr28:3411057-3410875 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 35, 153 |
| Conread position: | 90-281 |
| Cow position: | chr28:27161393-27161206 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 38, 47 |
| Conread position: | 90-284 |
| Cow position: | chr28:4181938-4182126 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 158, 42 |
| Conread position: | 90-286 |
| Cow position: | chr28:11585270-11585073 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 47, 170 |
| Conread position: | 91-278 |
| Cow position: | chr28:20124719-20124904 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 104, 43 |
| Conread position: | 91-281 |
| Cow position: | chr28:7350593-7350775 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 91-281 |
| Cow position: | chr28:28164022-28164210 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 38, 87 |
| Conread position: | 92-278 |
| Cow position: | chr28:25056903-25057083 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 174, 46 |
| Conread position: | 97-276 |
| Cow position: | chr28:3023974-3023793 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 42, 168 |
| Conread position: | 97-281 |
| Cow position: | chr28:3445541-3445359 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 31, 55 |
| Conread position: | 99-294 |
| Cow position: | chr28:2131983-2131786 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 40, 32 |
| Conread position: | 101-279 |
| Cow position: | chr28:4438655-4438831 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 147, 128 |
| Conread position: | 104-228 |
| Cow position: | chr28:2762142-2762266 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.