Cow genome map
| Conread name: | Tra1-TCH01B050021 |
| Conread position: | 6-278 |
| Cow position: | chr29:25737573-25737296 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 11, 18 |
| Conread position: | 13-231 |
| Cow position: | chr29:27846313-27846531 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 18 |
| Conread position: | 43-294 |
| Cow position: | chr29:8926586-8926334 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 34, 16 |
| Conread position: | 56-228 |
| Cow position: | chr29:40166131-40166308 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 79-228 |
| Cow position: | chr29:18012471-18012622 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 80-228 |
| Cow position: | chr29:31674546-31674697 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 80-278 |
| Cow position: | chr29:19762186-19762382 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 15, 58 |
| Conread position: | 80-295 |
| Cow position: | chr29:34359064-34358850 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 13, 171 |
| Conread position: | 81-292 |
| Cow position: | chr29:5186579-5186362 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 7, 59 |
| Conread position: | 88-228 |
| Cow position: | chr29:22714798-22714659 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 88-228 |
| Cow position: | chr29:23243954-23243814 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 41, 65 |
| Conread position: | 88-230 |
| Cow position: | chr29:24578784-24578929 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 88-252 |
| Cow position: | chr29:36530793-36530957 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 24, 9 |
| Conread position: | 88-267 |
| Cow position: | chr29:26615796-26615618 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 88-273 |
| Cow position: | chr29:12680084-12680262 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 153, 37 |
| Conread position: | 88-273 |
| Cow position: | chr29:27329818-27330004 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 146, 48 |
| Conread position: | 88-274 |
| Cow position: | chr29:23220576-23220390 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 42, 175 |
| Conread position: | 88-281 |
| Cow position: | chr29:4480246-4480059 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 142, 90 |
| Conread position: | 88-281 |
| Cow position: | chr29:29176689-29176503 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 88-281 |
| Cow position: | chr29:34773808-34773621 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 148, 40 |
| Conread position: | 88-281 |
| Cow position: | chr29:41112949-41112767 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 88-293 |
| Cow position: | chr29:87090-86886 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 52, 144 |
| Conread position: | 88-295 |
| Cow position: | chr29:9709621-9709822 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 80, 44 |
| Conread position: | 89-276 |
| Cow position: | chr29:17607342-17607527 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 44, 143 |
| Conread position: | 89-277 |
| Cow position: | chr29:23825292-23825099 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 27, 7 |
| Conread position: | 89-278 |
| Cow position: | chr29:20770270-20770458 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 40, 109 |
| Conread position: | 89-294 |
| Cow position: | chr29:29324487-29324295 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 89-302 |
| Cow position: | chr29:29314728-29314513 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 38, 163 |
| Conread position: | 90-228 |
| Cow position: | chr29:22162325-22162185 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 97-255 |
| Cow position: | chr29:38978464-38978623 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 97-304 |
| Cow position: | chr29:30548708-30548912 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 32, 149 |
| Conread position: | 98-267 |
| Cow position: | chr29:31943800-31943970 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 28, 40 |
| Conread position: | 102-230 |
| Cow position: | chr29:31477177-31477047 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 29, 42 |
Show alignments to all cow chromosomes.