Cow genome map
| Conread name: | Tra1-TCH01B050021 |
| Conread position: | 40-228 |
| Cow position: | chr4:62471956-62472138 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-280 |
| Cow position: | chr4:13344416-13344645 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 15, 184 |
| Conread position: | 52-282 |
| Cow position: | chr4:53100679-53100916 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 20, 220 |
| Conread position: | 56-281 |
| Cow position: | chr4:3421506-3421735 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 29, 206 |
| Conread position: | 56-281 |
| Cow position: | chr4:42423919-42423696 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 39, 9 |
| Conread position: | 56-294 |
| Cow position: | chr4:48961601-48961364 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 29, 148 |
| Conread position: | 57-227 |
| Cow position: | chr4:20027220-20027045 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 57-294 |
| Cow position: | chr4:59377794-59378031 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 28, 83 |
| Conread position: | 76-228 |
| Cow position: | chr4:34641823-34641667 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 76-281 |
| Cow position: | chr4:40414724-40414519 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 12, 156 |
| Conread position: | 77-228 |
| Cow position: | chr4:33970997-33970838 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 77-278 |
| Cow position: | chr4:34337366-34337161 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 11, 128 |
| Conread position: | 77-282 |
| Cow position: | chr4:48485901-48486106 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 52, 32 |
| Conread position: | 79-248 |
| Cow position: | chr4:24458196-24458021 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 9, 158 |
| Conread position: | 80-228 |
| Cow position: | chr4:42921941-42921801 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 80-230 |
| Cow position: | chr4:31136661-31136816 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 9, 109 |
| Conread position: | 80-255 |
| Cow position: | chr4:44449594-44449421 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 76, 47 |
| Conread position: | 80-278 |
| Cow position: | chr4:19323884-19324083 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 49, 153 |
| Conread position: | 80-278 |
| Cow position: | chr4:52832108-52831906 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 12, 106 |
| Conread position: | 80-281 |
| Cow position: | chr4:21874084-21874287 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 56, 171 |
| Conread position: | 80-295 |
| Cow position: | chr4:51851116-51851329 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 25 |
| Conread position: | 82-260 |
| Cow position: | chr4:19493466-19493649 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 87-228 |
| Cow position: | chr4:21064954-21065095 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 41, 66 |
| Conread position: | 87-279 |
| Cow position: | chr4:24002048-24001859 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 53, 143 |
| Conread position: | 88-220 |
| Cow position: | chr4:46566554-46566419 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 88-228 |
| Cow position: | chr4:16799268-16799127 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 88-228 |
| Cow position: | chr4:21232954-21232815 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 17, 51 |
| Conread position: | 88-228 |
| Cow position: | chr4:25537465-25537607 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 88-228 |
| Cow position: | chr4:38935276-38935418 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 88-228 |
| Cow position: | chr4:38944338-38944199 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 40, 93 |
| Conread position: | 88-228 |
| Cow position: | chr4:47730775-47730917 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 88-228 |
| Cow position: | chr4:48409350-48409210 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 59, 84 |
| Conread position: | 88-230 |
| Cow position: | chr4:48152451-48152314 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 88-252 |
| Cow position: | chr4:19700026-19700180 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 141, 36 |
| Conread position: | 88-269 |
| Cow position: | chr4:12049165-12049343 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 33, 112 |
| Conread position: | 88-271 |
| Cow position: | chr4:54455423-54455240 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 146, 111 |
| Conread position: | 88-274 |
| Cow position: | chr4:21391893-21391706 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 42, 84 |
| Conread position: | 88-276 |
| Cow position: | chr4:9815428-9815242 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 153, 146 |
| Conread position: | 88-276 |
| Cow position: | chr4:51727996-51728187 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 96, 173 |
| Conread position: | 88-278 |
| Cow position: | chr4:37915418-37915227 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 40, 96 |
| Conread position: | 88-281 |
| Cow position: | chr4:10379028-10379221 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 40, 142 |
| Conread position: | 88-282 |
| Cow position: | chr4:38157171-38156978 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 46, 143 |
| Conread position: | 88-283 |
| Cow position: | chr4:61897615-61897420 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 142, 37 |
| Conread position: | 88-285 |
| Cow position: | chr4:66136685-66136493 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 163, 48 |
| Conread position: | 88-292 |
| Cow position: | chr4:35981913-35982118 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 33, 151 |
| Conread position: | 88-294 |
| Cow position: | chr4:23847128-23846930 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 88-294 |
| Cow position: | chr4:28772148-28771945 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 40, 17 |
| Conread position: | 88-294 |
| Cow position: | chr4:36290548-36290746 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 153, 38 |
| Conread position: | 89-228 |
| Cow position: | chr4:34509761-34509899 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 41, 7 |
| Conread position: | 89-273 |
| Cow position: | chr4:20139596-20139414 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 50, 129 |
| Conread position: | 89-294 |
| Cow position: | chr4:58881042-58880840 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 44, 141 |
| Conread position: | 90-228 |
| Cow position: | chr4:60719021-60719160 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 90-228 |
| Cow position: | chr4:68889641-68889502 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 91-207 |
| Cow position: | chr4:19463418-19463534 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 91-229 |
| Cow position: | chr4:54927519-54927380 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 91-255 |
| Cow position: | chr4:11194106-11194273 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 100 |
| Conread position: | 91-265 |
| Cow position: | chr4:38952475-38952652 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 91-294 |
| Cow position: | chr4:46435245-46435446 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 49, 159 |
| Conread position: | 94-230 |
| Cow position: | chr4:620208-620074 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 46, 26 |
| Conread position: | 98-275 |
| Cow position: | chr4:48422805-48422979 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 35, 134 |
| Conread position: | 101-281 |
| Cow position: | chr4:54541708-54541529 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 31, 130 |
| Conread position: | 125-304 |
| Cow position: | chr4:18951928-18952106 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 9, 130 |
| Conread position: | 285-798 |
| Cow position: | chr4:54076169-54075660 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 80 |
Show alignments to all cow chromosomes.