Cow genome map
| Conread name: | Tra1-TCH01B050021 |
| Conread position: | 56-223 |
| Cow position: | chr5:15598321-15598148 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 56-272 |
| Cow position: | chr5:44028389-44028167 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 21, 147 |
| Conread position: | 56-281 |
| Cow position: | chr5:28302835-28302601 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 22, 34 |
| Conread position: | 57-228 |
| Cow position: | chr5:35785062-35784898 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 28, 50 |
| Conread position: | 57-278 |
| Cow position: | chr5:61725886-61726103 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 7, 125 |
| Conread position: | 79-304 |
| Cow position: | chr5:17602259-17602041 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 11, 48 |
| Conread position: | 80-227 |
| Cow position: | chr5:49440929-49440780 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 80-228 |
| Cow position: | chr5:29912362-29912513 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 80-228 |
| Cow position: | chr5:45845749-45845599 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 80-275 |
| Cow position: | chr5:65941307-65941112 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 52, 170 |
| Conread position: | 80-278 |
| Cow position: | chr5:64592151-64591953 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 168, 151 |
| Conread position: | 80-281 |
| Cow position: | chr5:38833066-38833263 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 53, 101 |
| Conread position: | 80-285 |
| Cow position: | chr5:35125996-35126201 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 9, 152 |
| Conread position: | 80-287 |
| Cow position: | chr5:57101837-57101631 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 54, 122 |
| Conread position: | 81-294 |
| Cow position: | chr5:56339074-56338866 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 153, 51 |
| Conread position: | 84-276 |
| Cow position: | chr5:35982792-35982596 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 46, 178 |
| Conread position: | 84-283 |
| Cow position: | chr5:20422239-20422047 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 40, 51 |
| Conread position: | 84-294 |
| Cow position: | chr5:20288314-20288105 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 157, 10 |
| Conread position: | 85-278 |
| Cow position: | chr5:56517052-56517243 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 45, 118 |
| Conread position: | 87-219 |
| Cow position: | chr5:34638836-34638967 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 87-255 |
| Cow position: | chr5:54375555-54375381 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 87-289 |
| Cow position: | chr5:17555080-17554883 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 46, 16 |
| Conread position: | 87-294 |
| Cow position: | chr5:52001669-52001468 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 182, 51 |
| Conread position: | 88-226 |
| Cow position: | chr5:21617410-21617548 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 48, 28 |
| Conread position: | 88-226 |
| Cow position: | chr5:57935156-57935018 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 88-228 |
| Cow position: | chr5:30302846-30302983 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 61 |
| Conread position: | 88-228 |
| Cow position: | chr5:46509914-46509773 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 51, 27 |
| Conread position: | 88-228 |
| Cow position: | chr5:65752810-65752952 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 88-229 |
| Cow position: | chr5:7044754-7044612 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 88-229 |
| Cow position: | chr5:37646593-37646450 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 88-231 |
| Cow position: | chr5:67118371-67118515 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 88-255 |
| Cow position: | chr5:62172367-62172533 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 144, 47 |
| Conread position: | 88-263 |
| Cow position: | chr5:66257591-66257766 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 35, 48 |
| Conread position: | 88-267 |
| Cow position: | chr5:26150468-26150292 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 153, 109 |
| Conread position: | 88-268 |
| Cow position: | chr5:55966926-55966744 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 35, 45 |
| Conread position: | 88-273 |
| Cow position: | chr5:57074380-57074192 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 51, 10 |
| Conread position: | 88-275 |
| Cow position: | chr5:6045244-6045434 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 40, 161 |
| Conread position: | 88-276 |
| Cow position: | chr5:24996270-24996082 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 54 |
| Conread position: | 88-276 |
| Cow position: | chr5:60183754-60183945 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 37, 166 |
| Conread position: | 88-277 |
| Cow position: | chr5:56070809-56070999 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 40, 121 |
| Conread position: | 88-278 |
| Cow position: | chr5:40109444-40109634 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 42, 123 |
| Conread position: | 88-279 |
| Cow position: | chr5:66366460-66366655 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 53, 37 |
| Conread position: | 88-280 |
| Cow position: | chr5:21828819-21829008 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 42, 140 |
| Conread position: | 88-281 |
| Cow position: | chr5:11229716-11229531 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 88-281 |
| Cow position: | chr5:14314478-14314671 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 42, 145 |
| Conread position: | 88-281 |
| Cow position: | chr5:44446915-44446723 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 41, 143 |
| Conread position: | 88-281 |
| Cow position: | chr5:59627021-59626828 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 45, 159 |
| Conread position: | 88-294 |
| Cow position: | chr5:17087069-17086863 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 40, 17 |
| Conread position: | 88-294 |
| Cow position: | chr5:23168876-23168671 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 43, 149 |
| Conread position: | 88-294 |
| Cow position: | chr5:43402853-43403064 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 35, 161 |
| Conread position: | 88-295 |
| Cow position: | chr5:26467576-26467786 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 38, 161 |
| Conread position: | 88-295 |
| Cow position: | chr5:30253694-30253897 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 160, 50 |
| Conread position: | 89-218 |
| Cow position: | chr5:30629204-30629077 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 89-228 |
| Cow position: | chr5:63192788-63192649 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 42, 114 |
| Conread position: | 89-275 |
| Cow position: | chr5:30232858-30233044 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 148 |
| Conread position: | 90-228 |
| Cow position: | chr5:5111120-5110982 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 50, 42 |
| Conread position: | 90-295 |
| Cow position: | chr5:50821737-50821943 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 41, 60 |
| Conread position: | 91-228 |
| Cow position: | chr5:72006537-72006398 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 91-230 |
| Cow position: | chr5:66551943-66551802 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 92-265 |
| Cow position: | chr5:45804016-45804190 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 58, 27 |
| Conread position: | 92-269 |
| Cow position: | chr5:69099675-69099849 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 40, 138 |
| Conread position: | 92-281 |
| Cow position: | chr5:69461287-69461477 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 34, 143 |
| Conread position: | 97-230 |
| Cow position: | chr5:61102676-61102810 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 87, 74 |
| Conread position: | 100-287 |
| Cow position: | chr5:57686776-57686589 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 27, 134 |
| Conread position: | 119-281 |
| Cow position: | chr5:9234005-9233846 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 129, 17 |
Show alignments to all cow chromosomes.