Cow genome map
| Conread name: | Tra1-TCH01B050021 |
| Conread position: | 51-215 |
| Cow position: | chr6:24962072-24962238 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 38, 14 |
| Conread position: | 56-228 |
| Cow position: | chr6:21231457-21231630 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 21, 81 |
| Conread position: | 56-228 |
| Cow position: | chr6:36202754-36202924 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 22, 56 |
| Conread position: | 56-265 |
| Cow position: | chr6:31535641-31535427 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 21, 181 |
| Conread position: | 56-293 |
| Cow position: | chr6:44194616-44194382 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 22, 63 |
| Conread position: | 58-287 |
| Cow position: | chr6:2078885-2078651 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 30, 182 |
| Conread position: | 59-281 |
| Cow position: | chr6:60516761-60516981 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 19, 76 |
| Conread position: | 64-278 |
| Cow position: | chr6:21869710-21869493 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 13, 168 |
| Conread position: | 76-233 |
| Cow position: | chr6:694196-694040 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 76-276 |
| Cow position: | chr6:29485041-29485237 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 125, 50 |
| Conread position: | 76-280 |
| Cow position: | chr6:47339402-47339200 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 34 |
| Conread position: | 76-287 |
| Cow position: | chr6:66375378-66375172 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 53 |
| Conread position: | 79-276 |
| Cow position: | chr6:17414493-17414290 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 9, 187 |
| Conread position: | 79-281 |
| Cow position: | chr6:9452815-9452614 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 55, 153 |
| Conread position: | 79-293 |
| Cow position: | chr6:61524247-61524033 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 47, 17 |
| Conread position: | 80-228 |
| Cow position: | chr6:15022591-15022441 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 80-228 |
| Cow position: | chr6:26915287-26915434 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 8, 57 |
| Conread position: | 80-228 |
| Cow position: | chr6:38218628-38218772 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 80-228 |
| Cow position: | chr6:59603254-59603102 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 80-229 |
| Cow position: | chr6:130204-130056 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 48, 101 |
| Conread position: | 80-275 |
| Cow position: | chr6:58597553-58597352 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 20, 184 |
| Conread position: | 80-277 |
| Cow position: | chr6:26728567-26728378 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 161, 53 |
| Conread position: | 80-286 |
| Cow position: | chr6:16423657-16423866 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 14, 145 |
| Conread position: | 80-292 |
| Cow position: | chr6:50504409-50504623 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 15, 154 |
| Conread position: | 80-295 |
| Cow position: | chr6:46860211-46860000 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 13, 47 |
| Conread position: | 81-228 |
| Cow position: | chr6:32121863-32122013 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 83-275 |
| Cow position: | chr6:59770189-59770375 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 46, 55 |
| Conread position: | 88-218 |
| Cow position: | chr6:1944679-1944809 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 39, 94 |
| Conread position: | 88-220 |
| Cow position: | chr6:32287605-32287737 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 65, 46 |
| Conread position: | 88-222 |
| Cow position: | chr6:36493582-36493441 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 127 |
| Conread position: | 88-226 |
| Cow position: | chr6:61608478-61608616 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 88-228 |
| Cow position: | chr6:17068682-17068542 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 88-228 |
| Cow position: | chr6:19264529-19264393 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 88-228 |
| Cow position: | chr6:20097997-20097853 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 88-228 |
| Cow position: | chr6:32517133-32517003 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 88-228 |
| Cow position: | chr6:60266215-60266077 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 88-230 |
| Cow position: | chr6:7128439-7128295 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 88-230 |
| Cow position: | chr6:66570404-66570548 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 88-252 |
| Cow position: | chr6:47640466-47640300 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 88-255 |
| Cow position: | chr6:18118085-18117915 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 42, 104 |
| Conread position: | 88-255 |
| Cow position: | chr6:32853153-32853322 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 41, 32 |
| Conread position: | 88-255 |
| Cow position: | chr6:65870997-65871171 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 88-269 |
| Cow position: | chr6:60468204-60468383 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 144, 164 |
| Conread position: | 88-276 |
| Cow position: | chr6:47574873-47575060 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 146, 43 |
| Conread position: | 88-277 |
| Cow position: | chr6:61269277-61269468 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 51, 162 |
| Conread position: | 88-278 |
| Cow position: | chr6:13687846-13687659 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 88-278 |
| Cow position: | chr6:52478447-52478254 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 41, 173 |
| Conread position: | 88-279 |
| Cow position: | chr6:3350986-3351187 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 39, 187 |
| Conread position: | 88-281 |
| Cow position: | chr6:34119388-34119198 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 30, 110 |
| Conread position: | 88-281 |
| Cow position: | chr6:54991036-54990845 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 40, 47 |
| Conread position: | 88-285 |
| Cow position: | chr6:54365363-54365172 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 141 |
| Conread position: | 88-289 |
| Cow position: | chr6:28977077-28976872 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 45, 174 |
| Conread position: | 88-294 |
| Cow position: | chr6:46465790-46465990 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 150, 46 |
| Conread position: | 88-298 |
| Cow position: | chr6:68816133-68816339 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 45, 65 |
| Conread position: | 90-222 |
| Cow position: | chr6:67615462-67615330 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 90-228 |
| Cow position: | chr6:120214-120351 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 46, 94 |
| Conread position: | 90-228 |
| Cow position: | chr6:60274042-60273903 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 132, 19 |
| Conread position: | 90-255 |
| Cow position: | chr6:51581284-51581121 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 42, 7 |
| Conread position: | 90-273 |
| Cow position: | chr6:48112167-48112350 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 144, 31 |
| Conread position: | 90-277 |
| Cow position: | chr6:55282318-55282138 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 158, 37 |
| Conread position: | 90-281 |
| Cow position: | chr6:8966060-8966253 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 37, 74 |
| Conread position: | 91-208 |
| Cow position: | chr6:11192497-11192378 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 91-281 |
| Cow position: | chr6:53460602-53460411 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 33, 147 |
| Conread position: | 91-283 |
| Cow position: | chr6:57571448-57571644 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 41, 45 |
| Conread position: | 92-228 |
| Cow position: | chr6:12197148-12197286 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 92-281 |
| Cow position: | chr6:10106010-10105823 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 47, 138 |
| Conread position: | 92-294 |
| Cow position: | chr6:49437303-49437506 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 138, 164 |
| Conread position: | 93-228 |
| Cow position: | chr6:60350323-60350186 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 97-283 |
| Cow position: | chr6:62056588-62056772 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 43, 133 |
| Conread position: | 97-294 |
| Cow position: | chr6:46283032-46282834 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 31, 135 |
| Conread position: | 97-294 |
| Cow position: | chr6:48097626-48097430 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 79, 23 |
| Conread position: | 97-295 |
| Cow position: | chr6:37332081-37332281 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 26, 12 |
| Conread position: | 100-281 |
| Cow position: | chr6:53089986-53090164 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 33, 130 |
| Conread position: | 102-304 |
| Cow position: | chr6:53546016-53546216 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 146, 23 |
| Conread position: | 104-295 |
| Cow position: | chr6:4702842-4702647 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 35, 85 |
Show alignments to all cow chromosomes.