Cow genome map
| Conread name: | Tra1-TCH01B050021 |
| Conread position: | 48-282 |
| Cow position: | chr7:32221979-32222223 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 30, 196 |
| Conread position: | 52-274 |
| Cow position: | chr7:68170675-68170446 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 33, 154 |
| Conread position: | 52-281 |
| Cow position: | chr7:15559616-15559845 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 20, 59 |
| Conread position: | 56-230 |
| Cow position: | chr7:21565628-21565454 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 29, 128 |
| Conread position: | 56-278 |
| Cow position: | chr7:45331477-45331698 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 32, 18 |
| Conread position: | 56-281 |
| Cow position: | chr7:47697944-47698163 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 16, 140 |
| Conread position: | 64-228 |
| Cow position: | chr7:63749534-63749368 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 71-255 |
| Cow position: | chr7:39415858-39416047 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 74-231 |
| Cow position: | chr7:46818542-46818383 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 76-230 |
| Cow position: | chr7:29509904-29510054 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 76-275 |
| Cow position: | chr7:36278249-36278452 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 22, 131 |
| Conread position: | 76-277 |
| Cow position: | chr7:4764801-4765002 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 55, 83 |
| Conread position: | 76-292 |
| Cow position: | chr7:26263703-26263480 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 7, 186 |
| Conread position: | 77-227 |
| Cow position: | chr7:32946024-32946175 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 11, 34 |
| Conread position: | 77-276 |
| Cow position: | chr7:40406609-40406806 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 155, 14 |
| Conread position: | 77-297 |
| Cow position: | chr7:50066162-50065940 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 18, 34 |
| Conread position: | 79-281 |
| Cow position: | chr7:23646565-23646772 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 64 |
| Conread position: | 80-257 |
| Cow position: | chr7:56886550-56886369 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 12, 55 |
| Conread position: | 80-262 |
| Cow position: | chr7:40263694-40263513 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 22, 104 |
| Conread position: | 80-275 |
| Cow position: | chr7:39904054-39904249 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 49, 137 |
| Conread position: | 80-277 |
| Cow position: | chr7:33393267-33393467 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 49, 181 |
| Conread position: | 80-280 |
| Cow position: | chr7:43711176-43711373 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 124 |
| Conread position: | 80-281 |
| Cow position: | chr7:24220630-24220827 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 165, 58 |
| Conread position: | 80-281 |
| Cow position: | chr7:27079586-27079787 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 9, 42 |
| Conread position: | 80-294 |
| Cow position: | chr7:17750877-17750671 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 9, 73 |
| Conread position: | 80-295 |
| Cow position: | chr7:31094390-31094172 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 12, 181 |
| Conread position: | 81-228 |
| Cow position: | chr7:17967164-17967018 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 14, 130 |
| Conread position: | 81-228 |
| Cow position: | chr7:48243633-48243780 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 8, 57 |
| Conread position: | 83-272 |
| Cow position: | chr7:18544418-18544229 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 171, 152 |
| Conread position: | 84-220 |
| Cow position: | chr7:13133733-13133600 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 46, 13 |
| Conread position: | 85-280 |
| Cow position: | chr7:61699731-61699531 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 9, 186 |
| Conread position: | 87-227 |
| Cow position: | chr7:53697943-53697800 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 87-281 |
| Cow position: | chr7:23456855-23456659 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 45, 163 |
| Conread position: | 87-281 |
| Cow position: | chr7:29505081-29505273 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 44, 143 |
| Conread position: | 88-221 |
| Cow position: | chr7:31170982-31170847 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 88-227 |
| Cow position: | chr7:8102391-8102528 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 88-227 |
| Cow position: | chr7:42593310-42593171 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 88-228 |
| Cow position: | chr7:28544145-28544285 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 88-228 |
| Cow position: | chr7:30276706-30276843 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 47, 21 |
| Conread position: | 88-228 |
| Cow position: | chr7:35245621-35245483 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 40, 94 |
| Conread position: | 88-228 |
| Cow position: | chr7:35275111-35274972 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 39, 114 |
| Conread position: | 88-232 |
| Cow position: | chr7:57593397-57593542 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 88-255 |
| Cow position: | chr7:32915079-32915252 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 89, 48 |
| Conread position: | 88-255 |
| Cow position: | chr7:48714821-48714991 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 88-256 |
| Cow position: | chr7:53053436-53053265 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 88-269 |
| Cow position: | chr7:48667381-48667566 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 34, 94 |
| Conread position: | 88-274 |
| Cow position: | chr7:8658483-8658670 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 40, 23 |
| Conread position: | 88-276 |
| Cow position: | chr7:49903739-49903928 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 34, 172 |
| Conread position: | 88-277 |
| Cow position: | chr7:26631844-26631655 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 106, 37 |
| Conread position: | 88-281 |
| Cow position: | chr7:20168517-20168712 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 48, 162 |
| Conread position: | 88-281 |
| Cow position: | chr7:49751096-49751284 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 44, 122 |
| Conread position: | 88-287 |
| Cow position: | chr7:49106232-49106034 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 43, 93 |
| Conread position: | 88-289 |
| Cow position: | chr7:60732670-60732473 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 47, 115 |
| Conread position: | 88-293 |
| Cow position: | chr7:5199581-5199382 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 35, 113 |
| Conread position: | 88-295 |
| Cow position: | chr7:50493961-50494166 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 43, 143 |
| Conread position: | 88-296 |
| Cow position: | chr7:32894280-32894071 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 143, 186 |
| Conread position: | 88-301 |
| Cow position: | chr7:17713503-17713293 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 89-228 |
| Cow position: | chr7:23761942-23762083 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 89-255 |
| Cow position: | chr7:23679621-23679448 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 95, 38 |
| Conread position: | 89-281 |
| Cow position: | chr7:10115-10306 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 35, 87 |
| Conread position: | 89-281 |
| Cow position: | chr7:35300449-35300259 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 41, 57 |
| Conread position: | 89-283 |
| Cow position: | chr7:10759744-10759546 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 136, 179 |
| Conread position: | 89-286 |
| Cow position: | chr7:18288298-18288106 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 47, 100 |
| Conread position: | 90-228 |
| Cow position: | chr7:3773297-3773158 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 43, 67 |
| Conread position: | 90-255 |
| Cow position: | chr7:4720260-4720094 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 38, 12 |
| Conread position: | 90-294 |
| Cow position: | chr7:28917059-28917262 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 49, 30 |
| Conread position: | 91-229 |
| Cow position: | chr7:40121436-40121581 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 91-275 |
| Cow position: | chr7:38082128-38082312 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 143, 45 |
| Conread position: | 91-285 |
| Cow position: | chr7:23936081-23936273 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 38, 69 |
| Conread position: | 92-277 |
| Cow position: | chr7:37361854-37362033 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 149, 44 |
| Conread position: | 92-278 |
| Cow position: | chr7:20534845-20535031 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 36, 19 |
| Conread position: | 97-281 |
| Cow position: | chr7:49405268-49405447 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 137, 39 |
| Conread position: | 98-272 |
| Cow position: | chr7:39451172-39450997 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 42, 137 |
| Conread position: | 99-228 |
| Cow position: | chr7:29121883-29122008 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
Show alignments to all cow chromosomes.