Cow genome map
| Conread name: | Tra1-TCH01B050021 |
| Conread position: | 41-294 |
| Cow position: | chr8:19284395-19284640 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 9, 20 |
| Conread position: | 45-242 |
| Cow position: | chr8:55897924-55897725 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 27, 193 |
| Conread position: | 51-296 |
| Cow position: | chr8:39807486-39807743 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 34, 211 |
| Conread position: | 56-228 |
| Cow position: | chr8:16653317-16653494 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 16, 82 |
| Conread position: | 56-228 |
| Cow position: | chr8:33406947-33406770 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 56-255 |
| Cow position: | chr8:28987602-28987805 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 36, 44 |
| Conread position: | 56-278 |
| Cow position: | chr8:23018610-23018388 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 29, 115 |
| Conread position: | 56-294 |
| Cow position: | chr8:8987046-8986798 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 66-281 |
| Cow position: | chr8:47169856-47170070 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 23, 166 |
| Conread position: | 67-228 |
| Cow position: | chr8:5437677-5437842 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 75-222 |
| Cow position: | chr8:25579458-25579608 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 76-228 |
| Cow position: | chr8:52772857-52773010 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 54, 14 |
| Conread position: | 76-278 |
| Cow position: | chr8:24867820-24867613 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 76-280 |
| Cow position: | chr8:27955229-27955026 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 46, 156 |
| Conread position: | 77-227 |
| Cow position: | chr8:19980157-19980004 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 21, 68 |
| Conread position: | 80-228 |
| Cow position: | chr8:5979869-5980019 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 22, 42 |
| Conread position: | 80-228 |
| Cow position: | chr8:26284927-26284778 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 13, 40 |
| Conread position: | 80-230 |
| Cow position: | chr8:15856898-15857052 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 80-292 |
| Cow position: | chr8:6224508-6224300 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 9, 123 |
| Conread position: | 80-294 |
| Cow position: | chr8:10456393-10456606 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 21, 152 |
| Conread position: | 80-296 |
| Cow position: | chr8:28313794-28313578 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 18, 59 |
| Conread position: | 81-219 |
| Cow position: | chr8:37854884-37854750 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 81-227 |
| Cow position: | chr8:37391431-37391284 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 44, 88 |
| Conread position: | 81-294 |
| Cow position: | chr8:4500423-4500633 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 151, 55 |
| Conread position: | 82-281 |
| Cow position: | chr8:58393494-58393689 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 84-220 |
| Cow position: | chr8:53746644-53746507 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 45, 29 |
| Conread position: | 85-281 |
| Cow position: | chr8:10337103-10336911 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 87-295 |
| Cow position: | chr8:48528027-48527825 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 203, 47 |
| Conread position: | 88-213 |
| Cow position: | chr8:12814822-12814947 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 88-224 |
| Cow position: | chr8:6073880-6073743 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 41, 77 |
| Conread position: | 88-227 |
| Cow position: | chr8:31985199-31985343 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 88-228 |
| Cow position: | chr8:14383251-14383117 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 88-228 |
| Cow position: | chr8:16031636-16031502 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 88-228 |
| Cow position: | chr8:16957567-16957699 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 88-228 |
| Cow position: | chr8:55871764-55871618 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 88-255 |
| Cow position: | chr8:12798855-12799025 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 43, 7 |
| Conread position: | 88-272 |
| Cow position: | chr8:45447164-45446974 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 88-275 |
| Cow position: | chr8:46082105-46082292 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 42, 110 |
| Conread position: | 88-277 |
| Cow position: | chr8:33640300-33640492 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 52, 157 |
| Conread position: | 88-278 |
| Cow position: | chr8:4924506-4924697 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 142, 43 |
| Conread position: | 88-278 |
| Cow position: | chr8:12213951-12214129 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 167, 21 |
| Conread position: | 88-278 |
| Cow position: | chr8:53633289-53633100 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 23, 61 |
| Conread position: | 88-281 |
| Cow position: | chr8:31297205-31297399 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 154, 48 |
| Conread position: | 88-281 |
| Cow position: | chr8:32278412-32278222 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 45, 63 |
| Conread position: | 88-281 |
| Cow position: | chr8:32621054-32620854 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 40, 169 |
| Conread position: | 88-281 |
| Cow position: | chr8:35580698-35580508 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 44, 10 |
| Conread position: | 88-281 |
| Cow position: | chr8:42762493-42762304 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 37, 49 |
| Conread position: | 88-283 |
| Cow position: | chr8:6484995-6484798 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 45, 172 |
| Conread position: | 88-283 |
| Cow position: | chr8:40579474-40579284 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 144, 45 |
| Conread position: | 88-294 |
| Cow position: | chr8:6531356-6531555 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 88-294 |
| Cow position: | chr8:8190128-8189925 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 45, 150 |
| Conread position: | 88-294 |
| Cow position: | chr8:15394923-15394721 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 203, 113 |
| Conread position: | 88-294 |
| Cow position: | chr8:18728723-18728926 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 42, 72 |
| Conread position: | 88-294 |
| Cow position: | chr8:29262713-29262922 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 41, 117 |
| Conread position: | 88-294 |
| Cow position: | chr8:35990987-35991195 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 35, 65 |
| Conread position: | 88-294 |
| Cow position: | chr8:46235641-46235835 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 141, 8 |
| Conread position: | 88-294 |
| Cow position: | chr8:54147602-54147806 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 51, 19 |
| Conread position: | 88-295 |
| Cow position: | chr8:17167504-17167715 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 39, 14 |
| Conread position: | 89-278 |
| Cow position: | chr8:10970769-10970963 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 36, 181 |
| Conread position: | 89-294 |
| Cow position: | chr8:39174307-39174102 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 51, 143 |
| Conread position: | 89-295 |
| Cow position: | chr8:41219264-41219473 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 40, 176 |
| Conread position: | 90-228 |
| Cow position: | chr8:1183003-1183138 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 90-245 |
| Cow position: | chr8:3339027-3339175 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 144, 35 |
| Conread position: | 90-255 |
| Cow position: | chr8:29625030-29624863 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 39, 91 |
| Conread position: | 90-272 |
| Cow position: | chr8:4648948-4648759 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 90-272 |
| Cow position: | chr8:58058681-58058870 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 90-277 |
| Cow position: | chr8:35971790-35971976 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 6, 35 |
| Conread position: | 90-281 |
| Cow position: | chr8:45126298-45126108 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 41, 157 |
| Conread position: | 90-281 |
| Cow position: | chr8:55716692-55716879 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 38, 112 |
| Conread position: | 90-281 |
| Cow position: | chr8:61157297-61157103 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 32, 165 |
| Conread position: | 91-228 |
| Cow position: | chr8:6248936-6248800 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 39, 107 |
| Conread position: | 91-230 |
| Cow position: | chr8:20320433-20320568 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 91-255 |
| Cow position: | chr8:18171077-18170910 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 91-278 |
| Cow position: | chr8:35563272-35563461 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 157 |
| Conread position: | 91-294 |
| Cow position: | chr8:37671984-37672175 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 177, 35 |
| Conread position: | 92-228 |
| Cow position: | chr8:47500743-47500882 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 93-228 |
| Cow position: | chr8:28294903-28294770 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 94-272 |
| Cow position: | chr8:24371773-24371592 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 42, 124 |
| Conread position: | 97-278 |
| Cow position: | chr8:55247646-55247466 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 30, 127 |
| Conread position: | 103-281 |
| Cow position: | chr8:37559083-37559258 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 38, 132 |
Show alignments to all cow chromosomes.