Cow genome map
| Conread name: | Tra1-TCH01B050021 |
| Conread position: | 52-270 |
| Cow position: | chr9:51204872-51204647 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 50, 210 |
| Conread position: | 56-227 |
| Cow position: | chr9:25557108-25556936 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 74, 30 |
| Conread position: | 56-228 |
| Cow position: | chr9:60027340-60027160 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 22, 127 |
| Conread position: | 56-294 |
| Cow position: | chr9:39011334-39011569 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 22, 65 |
| Conread position: | 57-285 |
| Cow position: | chr9:45756502-45756273 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 28, 178 |
| Conread position: | 61-216 |
| Cow position: | chr9:21080693-21080536 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 24, 10 |
| Conread position: | 80-220 |
| Cow position: | chr9:44831943-44832083 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 45, 122 |
| Conread position: | 80-274 |
| Cow position: | chr9:23431034-23431227 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 119 |
| Conread position: | 80-278 |
| Cow position: | chr9:34957943-34958140 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 51, 57 |
| Conread position: | 80-281 |
| Cow position: | chr9:9405939-9406140 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 55, 157 |
| Conread position: | 80-304 |
| Cow position: | chr9:48628140-48627920 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 54, 45 |
| Conread position: | 81-278 |
| Cow position: | chr9:54493249-54493048 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 7, 182 |
| Conread position: | 81-295 |
| Cow position: | chr9:17840566-17840779 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 54, 155 |
| Conread position: | 87-295 |
| Cow position: | chr9:29194920-29195132 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 48, 22 |
| Conread position: | 88-213 |
| Cow position: | chr9:6596133-6596258 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 88-226 |
| Cow position: | chr9:52267655-52267790 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 88-227 |
| Cow position: | chr9:7634375-7634235 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 88-228 |
| Cow position: | chr9:4267882-4268019 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 35, 22 |
| Conread position: | 88-228 |
| Cow position: | chr9:20091149-20091009 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 90, 46 |
| Conread position: | 88-228 |
| Cow position: | chr9:28747421-28747557 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 88-228 |
| Cow position: | chr9:33119784-33119925 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 88-228 |
| Cow position: | chr9:45285425-45285572 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 88-252 |
| Cow position: | chr9:5219067-5219235 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 88-255 |
| Cow position: | chr9:32981970-32982141 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 88-260 |
| Cow position: | chr9:41486139-41486314 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 88-274 |
| Cow position: | chr9:5263603-5263414 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 41, 118 |
| Conread position: | 88-275 |
| Cow position: | chr9:26344866-26345051 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 160, 65 |
| Conread position: | 88-277 |
| Cow position: | chr9:20848033-20847848 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 45, 122 |
| Conread position: | 88-278 |
| Cow position: | chr9:28754921-28754732 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 52, 142 |
| Conread position: | 88-280 |
| Cow position: | chr9:5763530-5763716 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 184, 102 |
| Conread position: | 88-281 |
| Cow position: | chr9:29006664-29006471 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 41, 144 |
| Conread position: | 88-281 |
| Cow position: | chr9:31078981-31079166 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 88-281 |
| Cow position: | chr9:33584581-33584772 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 41, 71 |
| Conread position: | 88-281 |
| Cow position: | chr9:45141500-45141687 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 36, 49 |
| Conread position: | 88-290 |
| Cow position: | chr9:41785322-41785116 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 38, 152 |
| Conread position: | 88-295 |
| Cow position: | chr9:13169560-13169765 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 141, 161 |
| Conread position: | 88-295 |
| Cow position: | chr9:34286904-34286698 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 44, 145 |
| Conread position: | 88-302 |
| Cow position: | chr9:5327357-5327150 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 144, 23 |
| Conread position: | 89-228 |
| Cow position: | chr9:43875613-43875756 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 90-279 |
| Cow position: | chr9:18380962-18380780 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 90-284 |
| Cow position: | chr9:49293046-49293232 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 92-281 |
| Cow position: | chr9:41728356-41728172 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 37, 20 |
| Conread position: | 93-255 |
| Cow position: | chr9:8636765-8636601 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 98-242 |
| Cow position: | chr9:53750863-53751009 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 45, 34 |
| Conread position: | 109-275 |
| Cow position: | chr9:63361635-63361803 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 14, 154 |
| Conread position: | 127-294 |
| Cow position: | chr9:8562885-8562722 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 16, 71 |
Show alignments to all cow chromosomes.