Cow genome map
| Conread name: | Tra1-TCH01B050021 |
| Conread position: | 9-294 |
| Cow position: | chrX:13912937-13913234 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 6, 248 |
| Conread position: | 13-227 |
| Cow position: | chrX:22115442-22115225 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 26, 18 |
| Conread position: | 44-294 |
| Cow position: | chrX:35885822-35885571 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 13, 19 |
| Conread position: | 49-295 |
| Cow position: | chrX:6278591-6278339 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 16, 186 |
| Conread position: | 65-281 |
| Cow position: | chrX:41192630-41192847 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 13, 169 |
| Conread position: | 76-307 |
| Cow position: | chrX:15815025-15815256 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 12, 69 |
| Conread position: | 77-228 |
| Cow position: | chrX:19469565-19469413 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 17, 57 |
| Conread position: | 77-278 |
| Cow position: | chrX:38066515-38066311 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 15, 34 |
| Conread position: | 77-295 |
| Cow position: | chrX:12979892-12979677 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 50, 18 |
| Conread position: | 78-235 |
| Cow position: | chrX:44095200-44095360 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 78-281 |
| Cow position: | chrX:7695695-7695891 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 80-228 |
| Cow position: | chrX:34532465-34532613 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 80-228 |
| Cow position: | chrX:34837112-34836971 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 80-273 |
| Cow position: | chrX:18273114-18272918 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 124 |
| Conread position: | 80-281 |
| Cow position: | chrX:17794921-17795126 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 42, 170 |
| Conread position: | 80-281 |
| Cow position: | chrX:31311973-31312172 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 61, 150 |
| Conread position: | 80-281 |
| Cow position: | chrX:31436422-31436617 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 81-228 |
| Cow position: | chrX:46429875-46429726 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 82-275 |
| Cow position: | chrX:42469998-42469798 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 86-276 |
| Cow position: | chrX:27306404-27306596 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 47, 174 |
| Conread position: | 87-278 |
| Cow position: | chrX:17725927-17726119 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 145, 172 |
| Conread position: | 88-208 |
| Cow position: | chrX:13785409-13785287 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 88-217 |
| Cow position: | chrX:619050-618920 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 88-226 |
| Cow position: | chrX:26881614-26881474 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 88-227 |
| Cow position: | chrX:35224250-35224388 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 88-228 |
| Cow position: | chrX:8869450-8869309 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 88-228 |
| Cow position: | chrX:14884004-14883863 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 88-228 |
| Cow position: | chrX:35985772-35985911 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 45, 100 |
| Conread position: | 88-255 |
| Cow position: | chrX:20584278-20584450 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 88-255 |
| Cow position: | chrX:40557727-40557557 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 88-274 |
| Cow position: | chrX:22393032-22392842 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 88-278 |
| Cow position: | chrX:4153081-4152888 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 47, 144 |
| Conread position: | 88-281 |
| Cow position: | chrX:29050201-29050391 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 39, 106 |
| Conread position: | 88-281 |
| Cow position: | chrX:34313983-34314167 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 45, 71 |
| Conread position: | 88-281 |
| Cow position: | chrX:36067967-36068162 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 40, 172 |
| Conread position: | 88-281 |
| Cow position: | chrX:37781157-37780965 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 43, 142 |
| Conread position: | 88-281 |
| Cow position: | chrX:45976876-45977069 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 41, 146 |
| Conread position: | 88-282 |
| Cow position: | chrX:9252208-9252019 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 88-292 |
| Cow position: | chrX:40685377-40685174 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 43, 145 |
| Conread position: | 88-294 |
| Cow position: | chrX:34411796-34412002 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 43, 164 |
| Conread position: | 88-294 |
| Cow position: | chrX:40269442-40269650 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 41, 144 |
| Conread position: | 88-294 |
| Cow position: | chrX:45846053-45846263 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 43, 88 |
| Conread position: | 89-276 |
| Cow position: | chrX:5919445-5919638 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 90-228 |
| Cow position: | chrX:6599828-6599689 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 90-274 |
| Cow position: | chrX:41871021-41871207 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 49, 170 |
| Conread position: | 90-282 |
| Cow position: | chrX:41884458-41884269 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 40, 160 |
| Conread position: | 91-228 |
| Cow position: | chrX:42927862-42927731 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 91-276 |
| Cow position: | chrX:11326143-11325958 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 40, 140 |
| Conread position: | 91-277 |
| Cow position: | chrX:1466118-1466303 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 138, 158 |
| Conread position: | 92-226 |
| Cow position: | chrX:12082367-12082233 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 51, 106 |
| Conread position: | 93-281 |
| Cow position: | chrX:38853156-38853343 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 40, 25 |
| Conread position: | 97-273 |
| Cow position: | chrX:19394515-19394687 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 97-281 |
| Cow position: | chrX:5135562-5135377 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 35, 145 |
| Conread position: | 98-295 |
| Cow position: | chrX:40532080-40531886 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 32, 39 |
| Conread position: | 101-295 |
| Cow position: | chrX:38642216-38642405 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 103-270 |
| Cow position: | chrX:19273744-19273576 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 20, 131 |
| Conread position: | 130-278 |
| Cow position: | chrX:2935952-2936099 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 115, 0 |
Show alignments to all cow chromosomes.