Cow genome map
| Conread name: | Tra1-TCH01B070018 |
| Conread position: | 43-237 |
| Cow position: | chr11:82292053-82291859 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 99, 83 |
| Conread position: | 44-240 |
| Cow position: | chr11:40540041-40540231 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 98, 49 |
| Conread position: | 44-330 |
| Cow position: | chr11:31661062-31660771 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 57, 84 |
| Conread position: | 46-219 |
| Cow position: | chr11:64822696-64822866 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 48-241 |
| Cow position: | chr11:38210289-38210478 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 93, 8 |
| Conread position: | 50-218 |
| Cow position: | chr11:12876716-12876885 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 90, 70 |
| Conread position: | 51-191 |
| Cow position: | chr11:52509193-52509053 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 91, 75 |
| Conread position: | 51-218 |
| Cow position: | chr11:73440381-73440549 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 95, 69 |
| Conread position: | 51-219 |
| Cow position: | chr11:37006101-37005937 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 89, 28 |
| Conread position: | 51-235 |
| Cow position: | chr11:8555497-8555678 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 51-240 |
| Cow position: | chr11:65878833-65879026 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 51-266 |
| Cow position: | chr11:38123593-38123378 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 91, 75 |
| Conread position: | 51-271 |
| Cow position: | chr11:10980309-10980529 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 58, 70 |
| Conread position: | 51-332 |
| Cow position: | chr11:82721556-82721276 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 51, 77 |
| Conread position: | 51-353 |
| Cow position: | chr11:41477773-41478068 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 125, 69 |
| Conread position: | 51-360 |
| Cow position: | chr11:8222210-8222501 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 127, 75 |
| Conread position: | 51-360 |
| Cow position: | chr11:38119519-38119824 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 50, 76 |
| Conread position: | 51-489 |
| Cow position: | chr11:7402495-7402938 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 300 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 90, 67 |
| Conread position: | 51-522 |
| Cow position: | chr11:38050257-38050738 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 59 |
| Conread position: | 52-191 |
| Cow position: | chr11:44547402-44547541 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 90, 75 |
| Conread position: | 52-329 |
| Cow position: | chr11:40535874-40535605 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 50, 79 |
| Conread position: | 53-238 |
| Cow position: | chr11:48257602-48257420 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 89, 73 |
| Conread position: | 55-397 |
| Cow position: | chr11:33769417-33769081 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 248 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 86, 71 |
| Conread position: | 57-235 |
| Cow position: | chr11:2890537-2890360 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 85, 69 |
| Conread position: | 65-522 |
| Cow position: | chr11:24726201-24725738 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 32 |
| Conread position: | 68-240 |
| Cow position: | chr11:32816234-32816060 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 73, 58 |
| Conread position: | 70-217 |
| Cow position: | chr11:65995326-65995179 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 70, 43 |
| Conread position: | 85-342 |
| Cow position: | chr11:79946579-79946317 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 55, 43 |
| Conread position: | 124-533 |
| Cow position: | chr11:58003107-58003516 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 291 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 17, 150 |
| Conread position: | 171-394 |
| Cow position: | chr11:33416921-33416702 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 60, 99 |
| Conread position: | 249-489 |
| Cow position: | chr11:12876886-12877129 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 170, 65 |
| Conread position: | 273-489 |
| Cow position: | chr11:81966316-81966092 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 74, 50 |
| Conread position: | 277-477 |
| Cow position: | chr11:4645314-4645516 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 121, 48 |
| Conread position: | 278-522 |
| Cow position: | chr11:52508995-52508744 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 124, 43 |
| Conread position: | 281-522 |
| Cow position: | chr11:73440574-73440821 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 139, 38 |
| Conread position: | 329-489 |
| Cow position: | chr11:37059790-37059622 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 90, 165 |
Show alignments to all cow chromosomes.