Cow genome map
| Conread name: | Tra1-TCH01B070018 |
| Conread position: | 38-218 |
| Cow position: | chr21:1153466-1153647 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 104, 88 |
| Conread position: | 45-373 |
| Cow position: | chr21:39681211-39680881 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 239 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 95, 35 |
| Conread position: | 46-296 |
| Cow position: | chr21:16762119-16762368 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 95, 24 |
| Conread position: | 46-360 |
| Cow position: | chr21:42133580-42133269 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 230 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 95, 59 |
| Conread position: | 46-523 |
| Cow position: | chr21:48535115-48535599 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 331 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 96, 80 |
| Conread position: | 51-191 |
| Cow position: | chr21:19487444-19487584 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 87, 69 |
| Conread position: | 51-191 |
| Cow position: | chr21:39713502-39713362 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 94, 75 |
| Conread position: | 51-192 |
| Cow position: | chr21:26513438-26513579 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 88, 61 |
| Conread position: | 51-217 |
| Cow position: | chr21:26608298-26608464 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 90, 62 |
| Conread position: | 51-333 |
| Cow position: | chr21:12896899-12897171 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 49, 35 |
| Conread position: | 51-352 |
| Cow position: | chr21:37515942-37516243 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 227 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 51, 76 |
| Conread position: | 51-527 |
| Cow position: | chr21:2518432-2518904 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 76 |
| Conread position: | 55-217 |
| Cow position: | chr21:40107131-40107295 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 86, 64 |
| Conread position: | 55-240 |
| Cow position: | chr21:39684022-39684209 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 85, 72 |
| Conread position: | 55-408 |
| Cow position: | chr21:9204107-9203768 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 257 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 87, 72 |
| Conread position: | 65-219 |
| Cow position: | chr21:39327751-39327600 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 76, 62 |
| Conread position: | 68-197 |
| Cow position: | chr21:44562382-44562509 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 70-525 |
| Cow position: | chr21:19048321-19047855 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 27 |
| Conread position: | 74-359 |
| Cow position: | chr21:18489634-18489913 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 68, 28 |
| Conread position: | 85-257 |
| Cow position: | chr21:29980659-29980827 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 57, 35 |
| Conread position: | 88-243 |
| Cow position: | chr21:41551376-41551529 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 52, 32 |
| Conread position: | 95-237 |
| Cow position: | chr21:23843425-23843572 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 46, 25 |
| Conread position: | 100-243 |
| Cow position: | chr21:41297911-41297769 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 42, 26 |
| Conread position: | 101-333 |
| Cow position: | chr21:12977706-12977474 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 45, 25 |
| Conread position: | 197-522 |
| Cow position: | chr21:13268261-13267938 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 81, 28 |
| Conread position: | 254-481 |
| Cow position: | chr21:41551511-41551746 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 20, 69 |
| Conread position: | 263-524 |
| Cow position: | chr21:29981628-29981881 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 144, 67 |
| Conread position: | 273-483 |
| Cow position: | chr21:41297767-41297552 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 147, 59 |
| Conread position: | 273-522 |
| Cow position: | chr21:3511325-3511072 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 103, 55 |
| Conread position: | 274-401 |
| Cow position: | chr21:29035275-29035398 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 280-468 |
| Cow position: | chr21:23308219-23308413 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 13, 43 |
| Conread position: | 281-480 |
| Cow position: | chr21:44562789-44562994 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 128, 38 |
| Conread position: | 283-524 |
| Cow position: | chr21:26608506-26608747 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 192 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 97, 34 |
| Conread position: | 302-483 |
| Cow position: | chr21:9956521-9956712 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 322-480 |
| Cow position: | chr21:1153929-1154096 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 97, 0 |
Show alignments to all cow chromosomes.