Cow genome map


           Conread name:
           Tra1-TCH01B120004
        

               Conread position:
               47-272
               

               Cow position:
               
               

               Alignm length:
               239
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               11, 72
               

               Conread position:
               47-346
               

               Cow position:
               
               

               Alignm length:
               323
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 114
               

               Conread position:
               47-376
               

               Cow position:
               
               

               Alignm length:
               358
               

               Alignm identity:
               255
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               11, 98
               

               Conread position:
               48-368
               

               Cow position:
               
               

               Alignm length:
               345
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 126
               

               Conread position:
               48-372
               

               Cow position:
               
               

               Alignm length:
               359
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 124
               

               Conread position:
               48-372
               

               Cow position:
               
               

               Alignm length:
               346
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 127
               

               Conread position:
               48-376
               

               Cow position:
               
               

               Alignm length:
               351
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 124
               

               Conread position:
               48-380
               

               Cow position:
               
               

               Alignm length:
               348
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 9
               

               Conread position:
               50-309
               

               Cow position:
               
               

               Alignm length:
               278
               

               Alignm identity:
               210
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               44, 122
               

               Conread position:
               50-361
               

               Cow position:
               
               

               Alignm length:
               336
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 112
               

               Conread position:
               50-376
               

               Cow position:
               
               

               Alignm length:
               353
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 14
               

               Conread position:
               51-230
               

               Cow position:
               
               

               Alignm length:
               190
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               30, 106
               

               Conread position:
               51-245
               

               Cow position:
               
               

               Alignm length:
               204
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               42, 100
               

               Conread position:
               51-269
               

               Cow position:
               
               

               Alignm length:
               228
               

               Alignm identity:
               162
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               42, 71
               

               Conread position:
               51-272
               

               Cow position:
               
               

               Alignm length:
               236
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               43, 123
               

               Conread position:
               51-273
               

               Cow position:
               
               

               Alignm length:
               235
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               43, 82
               

               Conread position:
               51-274
               

               Cow position:
               
               

               Alignm length:
               232
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 116
               

               Conread position:
               51-274
               

               Cow position:
               
               

               Alignm length:
               246
               

               Alignm identity:
               186
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               51-274
               

               Cow position:
               
               

               Alignm length:
               233
               

               Alignm identity:
               178
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               42, 109
               

               Conread position:
               51-274
               

               Cow position:
               
               

               Alignm length:
               231
               

               Alignm identity:
               179
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               42, 72
               

               Conread position:
               51-332
               

               Cow position:
               
               

               Alignm length:
               304
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 82
               

               Conread position:
               51-344
               

               Cow position:
               
               

               Alignm length:
               314
               

               Alignm identity:
               230
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               42, 82
               

               Conread position:
               51-371
               

               Cow position:
               
               

               Alignm length:
               343
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 78
               

               Conread position:
               51-372
               

               Cow position:
               
               

               Alignm length:
               343
               

               Alignm identity:
               246
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               42, 115
               

               Conread position:
               51-376
               

               Cow position:
               
               

               Alignm length:
               347
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 120
               

               Conread position:
               51-376
               

               Cow position:
               
               

               Alignm length:
               348
               

               Alignm identity:
               252
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               41, 82
               

               Conread position:
               51-376
               

               Cow position:
               
               

               Alignm length:
               344
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 108
               

               Conread position:
               51-376
               

               Cow position:
               
               

               Alignm length:
               348
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 109
               

               Conread position:
               51-376
               

               Cow position:
               
               

               Alignm length:
               360
               

               Alignm identity:
               260
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               43, 330
               

               Conread position:
               51-376
               

               Cow position:
               
               

               Alignm length:
               348
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 109
               

               Conread position:
               52-268
               

               Cow position:
               
               

               Alignm length:
               232
               

               Alignm identity:
               175
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               42, 110
               

               Conread position:
               53-332
               

               Cow position:
               
               

               Alignm length:
               301
               

               Alignm identity:
               220
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               41, 119
               

               Conread position:
               53-374
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               220
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               41, 80
               

               Conread position:
               54-215
               

               Cow position:
               
               

               Alignm length:
               172
               

               Alignm identity:
               132
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               39, 117
               

               Conread position:
               54-372
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               229
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               39, 98
               

               Conread position:
               57-219
               

               Cow position:
               
               

               Alignm length:
               171
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               37, 75
               

               Conread position:
               57-234
               

               Cow position:
               
               

               Alignm length:
               189
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               37, 109
               

               Conread position:
               57-258
               

               Cow position:
               
               

               Alignm length:
               218
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               57-268
               

               Cow position:
               
               

               Alignm length:
               222
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               77, 89
               

               Conread position:
               57-272
               

               Cow position:
               
               

               Alignm length:
               226
               

               Alignm identity:
               178
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               37, 75
               

               Conread position:
               57-274
               

               Cow position:
               
               

               Alignm length:
               237
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               57-274
               

               Cow position:
               
               

               Alignm length:
               228
               

               Alignm identity:
               181
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               36, 112
               

               Conread position:
               57-274
               

               Cow position:
               
               

               Alignm length:
               228
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               37, 97
               

               Conread position:
               57-274
               

               Cow position:
               
               

               Alignm length:
               226
               

               Alignm identity:
               176
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               36, 96
               

               Conread position:
               57-274
               

               Cow position:
               
               

               Alignm length:
               225
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               36, 75
               

               Conread position:
               57-332
               

               Cow position:
               
               

               Alignm length:
               301
               

               Alignm identity:
               217
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               36, 108
               

               Conread position:
               57-361
               

               Cow position:
               
               

               Alignm length:
               343
               

               Alignm identity:
               252
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               33, 315
               

               Conread position:
               57-372
               

               Cow position:
               
               

               Alignm length:
               334
               

               Alignm identity:
               244
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               36, 102
               

               Conread position:
               57-376
               

               Cow position:
               
               

               Alignm length:
               337
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 66
               

               Conread position:
               57-376
               

               Cow position:
               
               

               Alignm length:
               342
               

               Alignm identity:
               244
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               37, 75
               

               Conread position:
               57-376
               

               Cow position:
               
               

               Alignm length:
               336
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 110
               

               Conread position:
               57-396
               

               Cow position:
               
               

               Alignm length:
               364
               

               Alignm identity:
               253
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               37, 76
               

               Conread position:
               58-227
               

               Cow position:
               
               

               Alignm length:
               181
               

               Alignm identity:
               142
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               36, 114
               

               Conread position:
               58-238
               

               Cow position:
               
               

               Alignm length:
               192
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               36, 114
               

               Conread position:
               58-247
               

               Cow position:
               
               

               Alignm length:
               198
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               36, 94
               

               Conread position:
               58-274
               

               Cow position:
               
               

               Alignm length:
               224
               

               Alignm identity:
               175
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               36, 71
               

               Conread position:
               58-380
               

               Cow position:
               
               

               Alignm length:
               347
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               59-274
               

               Cow position:
               
               

               Alignm length:
               225
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               31, 63
               

               Conread position:
               62-372
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               240
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               32, 63
               

               Conread position:
               63-372
               

               Cow position:
               
               

               Alignm length:
               323
               

               Alignm identity:
               237
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               31, 90
               

               Conread position:
               495-719
               

               Cow position:
               
               

               Alignm length:
               225
               

               Alignm identity:
               170
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               130, 0
               
Show alignments to all cow chromosomes.