Cow genome map
| Conread name: | Tra1-TCH01B120004 |
| Conread position: | 47-272 |
| Cow position: | chr1:3353077-3353303 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 11, 72 |
| Conread position: | 47-346 |
| Cow position: | chr1:81355840-81356157 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 114 |
| Conread position: | 47-376 |
| Cow position: | chr1:55357422-55357772 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 255 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 11, 98 |
| Conread position: | 48-368 |
| Cow position: | chr1:42053462-42053801 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 126 |
| Conread position: | 48-372 |
| Cow position: | chr1:52753303-52753657 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 124 |
| Conread position: | 48-372 |
| Cow position: | chr1:79844329-79843988 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 127 |
| Conread position: | 48-376 |
| Cow position: | chr1:72105007-72104663 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 124 |
| Conread position: | 48-380 |
| Cow position: | chr1:53374294-53373956 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 9 |
| Conread position: | 50-309 |
| Cow position: | chr1:78783405-78783131 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 210 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 44, 122 |
| Conread position: | 50-361 |
| Cow position: | chr1:22827028-22826696 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 112 |
| Conread position: | 50-376 |
| Cow position: | chr1:12596045-12596395 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 14 |
| Conread position: | 51-230 |
| Cow position: | chr1:57900881-57901066 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 30, 106 |
| Conread position: | 51-245 |
| Cow position: | chr1:1053446-1053252 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 42, 100 |
| Conread position: | 51-269 |
| Cow position: | chr1:55135691-55135474 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 42, 71 |
| Conread position: | 51-272 |
| Cow position: | chr1:22467788-22467554 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 43, 123 |
| Conread position: | 51-273 |
| Cow position: | chr1:71045612-71045379 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 43, 82 |
| Conread position: | 51-274 |
| Cow position: | chr1:21460725-21460497 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 116 |
| Conread position: | 51-274 |
| Cow position: | chr1:51394282-51394037 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 51-274 |
| Cow position: | chr1:72304513-72304740 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 42, 109 |
| Conread position: | 51-274 |
| Cow position: | chr1:82884532-82884758 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 179 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 42, 72 |
| Conread position: | 51-332 |
| Cow position: | chr1:52039494-52039195 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 82 |
| Conread position: | 51-344 |
| Cow position: | chr1:44836372-44836684 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 42, 82 |
| Conread position: | 51-371 |
| Cow position: | chr1:99136573-99136910 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 78 |
| Conread position: | 51-372 |
| Cow position: | chr1:11873499-11873837 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 246 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 42, 115 |
| Conread position: | 51-376 |
| Cow position: | chr1:4374481-4374818 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 120 |
| Conread position: | 51-376 |
| Cow position: | chr1:15547326-15546988 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 252 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 41, 82 |
| Conread position: | 51-376 |
| Cow position: | chr1:36874872-36874532 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 108 |
| Conread position: | 51-376 |
| Cow position: | chr1:57957000-57957344 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 109 |
| Conread position: | 51-376 |
| Cow position: | chr1:68817941-68818298 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 260 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 43, 330 |
| Conread position: | 51-376 |
| Cow position: | chr1:94226690-94227032 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 109 |
| Conread position: | 52-268 |
| Cow position: | chr1:57698597-57698825 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 42, 110 |
| Conread position: | 53-332 |
| Cow position: | chr1:36613419-36613716 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 220 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 41, 119 |
| Conread position: | 53-374 |
| Cow position: | chr1:27462851-27462539 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 41, 80 |
| Conread position: | 54-215 |
| Cow position: | chr1:73561795-73561963 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 39, 117 |
| Conread position: | 54-372 |
| Cow position: | chr1:100400347-100400671 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 229 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 39, 98 |
| Conread position: | 57-219 |
| Cow position: | chr1:69445222-69445056 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 37, 75 |
| Conread position: | 57-234 |
| Cow position: | chr1:7350390-7350205 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 37, 109 |
| Conread position: | 57-258 |
| Cow position: | chr1:100551822-100551605 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 57-268 |
| Cow position: | chr1:26918494-26918714 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 77, 89 |
| Conread position: | 57-272 |
| Cow position: | chr1:61391941-61392164 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 178 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 37, 75 |
| Conread position: | 57-274 |
| Cow position: | chr1:23624016-23623780 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 57-274 |
| Cow position: | chr1:41138503-41138726 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 181 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 36, 112 |
| Conread position: | 57-274 |
| Cow position: | chr1:53495315-53495089 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 37, 97 |
| Conread position: | 57-274 |
| Cow position: | chr1:53520758-53520539 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 176 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 36, 96 |
| Conread position: | 57-274 |
| Cow position: | chr1:91800754-91800971 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 36, 75 |
| Conread position: | 57-332 |
| Cow position: | chr1:52496633-52496336 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 36, 108 |
| Conread position: | 57-361 |
| Cow position: | chr1:73584551-73584892 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 252 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 33, 315 |
| Conread position: | 57-372 |
| Cow position: | chr1:84255606-84255280 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 244 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 36, 102 |
| Conread position: | 57-376 |
| Cow position: | chr1:45289022-45289353 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 66 |
| Conread position: | 57-376 |
| Cow position: | chr1:92370510-92370847 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 244 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 37, 75 |
| Conread position: | 57-376 |
| Cow position: | chr1:98551564-98551235 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 110 |
| Conread position: | 57-396 |
| Cow position: | chr1:11226394-11226753 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 37, 76 |
| Conread position: | 58-227 |
| Cow position: | chr1:732074-732251 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 36, 114 |
| Conread position: | 58-238 |
| Cow position: | chr1:81913301-81913486 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 36, 114 |
| Conread position: | 58-247 |
| Cow position: | chr1:100705983-100705790 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 36, 94 |
| Conread position: | 58-274 |
| Cow position: | chr1:42869306-42869524 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 36, 71 |
| Conread position: | 58-380 |
| Cow position: | chr1:20384770-20385116 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 59-274 |
| Cow position: | chr1:95017666-95017884 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 31, 63 |
| Conread position: | 62-372 |
| Cow position: | chr1:81859385-81859696 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 240 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 32, 63 |
| Conread position: | 63-372 |
| Cow position: | chr1:44136616-44136926 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 237 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 31, 90 |
| Conread position: | 495-719 |
| Cow position: | chr1:98740687-98740469 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 130, 0 |
Show alignments to all cow chromosomes.