Cow genome map
| Conread name: | Tra1-TCH01B120004 |
| Conread position: | 43-274 |
| Cow position: | chr10:59588333-59588571 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 11 |
| Conread position: | 47-234 |
| Cow position: | chr10:4311021-4310827 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 9, 108 |
| Conread position: | 47-372 |
| Cow position: | chr10:42346594-42346944 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 47-376 |
| Cow position: | chr10:33665671-33665326 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 250 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 47, 119 |
| Conread position: | 47-379 |
| Cow position: | chr10:69934944-69935294 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 123 |
| Conread position: | 48-168 |
| Cow position: | chr10:31266498-31266624 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 45, 85 |
| Conread position: | 48-226 |
| Cow position: | chr10:15889316-15889134 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 45, 120 |
| Conread position: | 48-274 |
| Cow position: | chr10:16598519-16598286 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 184 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 46, 124 |
| Conread position: | 48-274 |
| Cow position: | chr10:61839429-61839196 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 124 |
| Conread position: | 48-274 |
| Cow position: | chr10:65132789-65132555 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 42, 112 |
| Conread position: | 48-372 |
| Cow position: | chr10:10048512-10048178 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 242 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 44, 77 |
| Conread position: | 48-376 |
| Cow position: | chr10:60237285-60237635 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 257 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 45, 173 |
| Conread position: | 48-380 |
| Cow position: | chr10:34660389-34660735 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 249 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 42, 120 |
| Conread position: | 51-268 |
| Cow position: | chr10:34906538-34906313 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 13, 123 |
| Conread position: | 51-269 |
| Cow position: | chr10:56475296-56475070 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 42, 121 |
| Conread position: | 51-273 |
| Cow position: | chr10:5264527-5264298 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 118 |
| Conread position: | 51-274 |
| Cow position: | chr10:24548085-24547855 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 120 |
| Conread position: | 51-274 |
| Cow position: | chr10:24870992-24870760 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 180 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 42, 102 |
| Conread position: | 51-275 |
| Cow position: | chr10:24497075-24497307 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 42, 82 |
| Conread position: | 51-279 |
| Cow position: | chr10:19895226-19894991 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 82 |
| Conread position: | 51-370 |
| Cow position: | chr10:20735535-20735198 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 239 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 42, 110 |
| Conread position: | 51-372 |
| Cow position: | chr10:6719729-6719389 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 110 |
| Conread position: | 51-376 |
| Cow position: | chr10:18042012-18041662 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 128 |
| Conread position: | 51-376 |
| Cow position: | chr10:25259856-25259508 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 103 |
| Conread position: | 51-376 |
| Cow position: | chr10:52152350-52152005 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 121 |
| Conread position: | 51-378 |
| Cow position: | chr10:9526247-9526594 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 249 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 42, 122 |
| Conread position: | 54-199 |
| Cow position: | chr10:37014460-37014310 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 40, 117 |
| Conread position: | 54-376 |
| Cow position: | chr10:2708202-2707883 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 222, 40 |
| Conread position: | 56-247 |
| Cow position: | chr10:35026148-35025949 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 37, 114 |
| Conread position: | 57-216 |
| Cow position: | chr10:6543396-6543233 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 37, 99 |
| Conread position: | 57-218 |
| Cow position: | chr10:1749396-1749226 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 36, 113 |
| Conread position: | 57-247 |
| Cow position: | chr10:805016-804817 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 36, 118 |
| Conread position: | 57-268 |
| Cow position: | chr10:52569413-52569197 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 112 |
| Conread position: | 57-272 |
| Cow position: | chr10:1427861-1427639 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 178 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 36, 61 |
| Conread position: | 57-273 |
| Cow position: | chr10:35862409-35862632 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 37, 96 |
| Conread position: | 57-274 |
| Cow position: | chr10:888747-888513 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 36, 73 |
| Conread position: | 57-274 |
| Cow position: | chr10:6505182-6504947 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 57-274 |
| Cow position: | chr10:8404030-8403794 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 36, 110 |
| Conread position: | 57-274 |
| Cow position: | chr10:35903124-35903348 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 178 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 37, 72 |
| Conread position: | 57-274 |
| Cow position: | chr10:35905007-35905234 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 34, 115 |
| Conread position: | 57-274 |
| Cow position: | chr10:57736343-57736567 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 36, 170 |
| Conread position: | 57-290 |
| Cow position: | chr10:15817975-15818210 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 96 |
| Conread position: | 57-330 |
| Cow position: | chr10:5113407-5113117 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 113 |
| Conread position: | 57-372 |
| Cow position: | chr10:3998726-3998401 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 234 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 36, 108 |
| Conread position: | 57-375 |
| Cow position: | chr10:19503653-19503985 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 246 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 37, 114 |
| Conread position: | 57-375 |
| Cow position: | chr10:41737127-41736802 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 226 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 36, 230 |
| Conread position: | 57-376 |
| Cow position: | chr10:24022462-24022799 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 37, 74 |
| Conread position: | 57-376 |
| Cow position: | chr10:40270427-40270124 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 65 |
| Conread position: | 57-376 |
| Cow position: | chr10:53973665-53973344 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 69 |
| Conread position: | 57-396 |
| Cow position: | chr10:11247794-11247442 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 247 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 36, 68 |
| Conread position: | 61-349 |
| Cow position: | chr10:22520349-22520643 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 32, 72 |
| Conread position: | 62-376 |
| Cow position: | chr10:6252668-6253006 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 106 |
| Conread position: | 62-376 |
| Cow position: | chr10:58066318-58066652 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 93 |
| Conread position: | 62-380 |
| Cow position: | chr10:14817349-14817655 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 31, 60 |
Show alignments to all cow chromosomes.