Cow genome map
| Conread name: | Tra1-TCH01B120004 |
| Conread position: | 47-199 |
| Cow position: | chr11:68910009-68910176 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 9, 116 |
| Conread position: | 48-271 |
| Cow position: | chr11:81174728-81174495 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 88 |
| Conread position: | 48-271 |
| Cow position: | chr11:83196334-83196106 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 85 |
| Conread position: | 48-274 |
| Cow position: | chr11:81931244-81931468 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 7, 48 |
| Conread position: | 48-290 |
| Cow position: | chr11:31900883-31900635 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 45, 123 |
| Conread position: | 48-376 |
| Cow position: | chr11:4384460-4384118 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 66 |
| Conread position: | 48-376 |
| Cow position: | chr11:59702320-59701973 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 123 |
| Conread position: | 51-240 |
| Cow position: | chr11:53130644-53130451 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 42, 82 |
| Conread position: | 51-263 |
| Cow position: | chr11:58990343-58990123 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 173 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 43, 121 |
| Conread position: | 51-269 |
| Cow position: | chr11:27907385-27907163 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 42, 121 |
| Conread position: | 51-274 |
| Cow position: | chr11:27939319-27939088 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 42, 121 |
| Conread position: | 51-279 |
| Cow position: | chr11:3797242-3797006 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 121 |
| Conread position: | 51-360 |
| Cow position: | chr11:29947094-29947427 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 241 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 51-372 |
| Cow position: | chr11:67951130-67951456 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 43, 81 |
| Conread position: | 51-376 |
| Cow position: | chr11:68570840-68571183 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 108 |
| Conread position: | 52-376 |
| Cow position: | chr11:55117304-55116962 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 108 |
| Conread position: | 54-268 |
| Cow position: | chr11:31873395-31873175 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 39, 68 |
| Conread position: | 54-375 |
| Cow position: | chr11:30165336-30164989 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 73 |
| Conread position: | 56-376 |
| Cow position: | chr11:39115321-39114990 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 97 |
| Conread position: | 57-273 |
| Cow position: | chr11:3704146-3703923 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 37, 114 |
| Conread position: | 57-274 |
| Cow position: | chr11:11534077-11534295 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 36, 121 |
| Conread position: | 57-274 |
| Cow position: | chr11:42083306-42083085 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 172 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 36, 99 |
| Conread position: | 57-286 |
| Cow position: | chr11:58588171-58587932 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 36, 97 |
| Conread position: | 57-324 |
| Cow position: | chr11:69119126-69118838 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 36, 115 |
| Conread position: | 57-372 |
| Cow position: | chr11:16251422-16251762 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 321 |
| Conread position: | 57-372 |
| Cow position: | chr11:50197618-50197940 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 115 |
| Conread position: | 57-372 |
| Cow position: | chr11:77750941-77751274 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 244 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 36, 76 |
| Conread position: | 57-376 |
| Cow position: | chr11:16795326-16795659 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 95 |
| Conread position: | 57-376 |
| Cow position: | chr11:17831401-17831744 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 135 |
| Conread position: | 57-376 |
| Cow position: | chr11:23128713-23129057 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 293 |
| Conread position: | 57-376 |
| Cow position: | chr11:33414060-33413731 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 113 |
| Conread position: | 57-376 |
| Cow position: | chr11:40458947-40458611 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 103 |
| Conread position: | 57-376 |
| Cow position: | chr11:50152992-50153325 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 102 |
| Conread position: | 62-252 |
| Cow position: | chr11:62490255-62490058 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 32, 110 |
| Conread position: | 62-266 |
| Cow position: | chr11:84385825-84386027 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 30, 63 |
| Conread position: | 62-268 |
| Cow position: | chr11:80002851-80002644 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 92, 78 |
| Conread position: | 62-269 |
| Cow position: | chr11:37118306-37118091 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 32, 98 |
| Conread position: | 62-376 |
| Cow position: | chr11:48272016-48271688 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 91 |
| Conread position: | 62-376 |
| Cow position: | chr11:77750025-77749708 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 75, 103 |
Show alignments to all cow chromosomes.