Cow genome map
| Conread name: | Tra1-TCH01B120004 |
| Conread position: | 47-213 |
| Cow position: | chr17:8544204-8544030 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 9, 110 |
| Conread position: | 47-331 |
| Cow position: | chr17:923775-923473 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 5, 113 |
| Conread position: | 47-376 |
| Cow position: | chr17:21973235-21973583 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 125 |
| Conread position: | 47-376 |
| Cow position: | chr17:23337115-23337466 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 128 |
| Conread position: | 48-247 |
| Cow position: | chr17:34079203-34079410 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 45, 112 |
| Conread position: | 48-274 |
| Cow position: | chr17:24077296-24077066 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 184 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 44, 75 |
| Conread position: | 51-238 |
| Cow position: | chr17:1295679-1295874 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 41, 121 |
| Conread position: | 51-244 |
| Cow position: | chr17:40331657-40331460 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 43, 117 |
| Conread position: | 51-250 |
| Cow position: | chr17:36746428-36746627 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 41, 100 |
| Conread position: | 51-267 |
| Cow position: | chr17:26183114-26182890 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 179 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 43, 120 |
| Conread position: | 51-270 |
| Cow position: | chr17:9565201-9564975 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 181 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 42, 121 |
| Conread position: | 51-281 |
| Cow position: | chr17:2275167-2274930 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 186 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 42, 103 |
| Conread position: | 51-372 |
| Cow position: | chr17:11912808-11913148 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 120 |
| Conread position: | 51-372 |
| Cow position: | chr17:20269494-20269164 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 84 |
| Conread position: | 51-372 |
| Cow position: | chr17:41029845-41029498 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 251 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 42, 122 |
| Conread position: | 51-376 |
| Cow position: | chr17:12059199-12059544 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 82 |
| Conread position: | 51-376 |
| Cow position: | chr17:12289523-12289871 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 51-376 |
| Cow position: | chr17:24824144-24823813 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 89 |
| Conread position: | 51-376 |
| Cow position: | chr17:25541921-25542258 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 72 |
| Conread position: | 51-380 |
| Cow position: | chr17:29292475-29292832 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 257 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 43, 104 |
| Conread position: | 54-293 |
| Cow position: | chr17:22057284-22057531 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 118 |
| Conread position: | 57-269 |
| Cow position: | chr17:2729911-2730132 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 36, 116 |
| Conread position: | 57-270 |
| Cow position: | chr17:1061177-1061391 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 35, 95 |
| Conread position: | 57-272 |
| Cow position: | chr17:27679358-27679581 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 115 |
| Conread position: | 57-274 |
| Cow position: | chr17:4213642-4213418 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 36, 87 |
| Conread position: | 57-345 |
| Cow position: | chr17:11618466-11618160 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 226 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 35, 115 |
| Conread position: | 57-350 |
| Cow position: | chr17:11386400-11386090 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 224 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 37, 76 |
| Conread position: | 57-351 |
| Cow position: | chr17:18592326-18592012 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 35, 110 |
| Conread position: | 57-365 |
| Cow position: | chr17:3153886-3154210 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 115 |
| Conread position: | 57-372 |
| Cow position: | chr17:4601662-4601989 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 76 |
| Conread position: | 57-372 |
| Cow position: | chr17:26230825-26230491 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 107 |
| Conread position: | 57-376 |
| Cow position: | chr17:16117542-16117882 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 247 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 36, 114 |
| Conread position: | 57-376 |
| Cow position: | chr17:21039161-21038830 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 112 |
| Conread position: | 57-376 |
| Cow position: | chr17:21806916-21807275 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 37, 99 |
| Conread position: | 57-376 |
| Cow position: | chr17:23101325-23101666 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 96 |
| Conread position: | 57-376 |
| Cow position: | chr17:27306044-27305713 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 74 |
| Conread position: | 62-275 |
| Cow position: | chr17:21680649-21680427 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 177 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 31, 110 |
Show alignments to all cow chromosomes.