Cow genome map
| Conread name: | Tra1-TCH01B120004 |
| Conread position: | 39-268 |
| Cow position: | chr2:69676669-69676908 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 22, 135 |
| Conread position: | 40-309 |
| Cow position: | chr2:76561977-76561686 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 127 |
| Conread position: | 47-279 |
| Cow position: | chr2:18997583-18997354 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 58 |
| Conread position: | 47-279 |
| Cow position: | chr2:70895888-70895647 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 9, 119 |
| Conread position: | 47-353 |
| Cow position: | chr2:55387406-55387081 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 88 |
| Conread position: | 48-215 |
| Cow position: | chr2:44032674-44032844 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 125 |
| Conread position: | 48-274 |
| Cow position: | chr2:29268917-29268686 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 10, 86 |
| Conread position: | 48-279 |
| Cow position: | chr2:39263343-39263106 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 42, 118 |
| Conread position: | 48-372 |
| Cow position: | chr2:37009273-37008927 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 124 |
| Conread position: | 48-376 |
| Cow position: | chr2:69223377-69223723 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 45, 78 |
| Conread position: | 50-357 |
| Cow position: | chr2:44222470-44222156 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 244 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 44, 83 |
| Conread position: | 51-238 |
| Cow position: | chr2:21407772-21407585 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 39, 99 |
| Conread position: | 51-273 |
| Cow position: | chr2:68109891-68110120 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 112 |
| Conread position: | 51-273 |
| Cow position: | chr2:69250825-69251056 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 39, 122 |
| Conread position: | 51-274 |
| Cow position: | chr2:8295686-8295449 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 189 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 41, 108 |
| Conread position: | 51-274 |
| Cow position: | chr2:21171250-21171023 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 181 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 42, 102 |
| Conread position: | 51-274 |
| Cow position: | chr2:46294185-46294413 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 119 |
| Conread position: | 51-274 |
| Cow position: | chr2:61485487-61485257 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 41, 108 |
| Conread position: | 51-274 |
| Cow position: | chr2:77359340-77359102 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 42, 60 |
| Conread position: | 51-286 |
| Cow position: | chr2:79403952-79403706 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 51-332 |
| Cow position: | chr2:70674584-70674289 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 41, 71 |
| Conread position: | 51-364 |
| Cow position: | chr2:7194054-7193723 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 249 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 43, 102 |
| Conread position: | 51-372 |
| Cow position: | chr2:82581079-82581418 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 117 |
| Conread position: | 51-375 |
| Cow position: | chr2:46171023-46171360 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 120 |
| Conread position: | 51-376 |
| Cow position: | chr2:19212192-19212535 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 82 |
| Conread position: | 51-376 |
| Cow position: | chr2:55278748-55279071 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 239 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 43, 83 |
| Conread position: | 51-380 |
| Cow position: | chr2:12185876-12185540 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 41, 68 |
| Conread position: | 52-293 |
| Cow position: | chr2:45575145-45575393 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 194 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 41, 120 |
| Conread position: | 54-246 |
| Cow position: | chr2:24007273-24007085 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 81, 41 |
| Conread position: | 54-274 |
| Cow position: | chr2:67301884-67301663 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 38, 89 |
| Conread position: | 54-344 |
| Cow position: | chr2:28820212-28819905 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 40, 77 |
| Conread position: | 54-376 |
| Cow position: | chr2:65604079-65604419 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 79 |
| Conread position: | 57-219 |
| Cow position: | chr2:81388536-81388367 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 36, 94 |
| Conread position: | 57-270 |
| Cow position: | chr2:56771689-56771472 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 36, 96 |
| Conread position: | 57-274 |
| Cow position: | chr2:40691333-40691108 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 180 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 37, 76 |
| Conread position: | 57-274 |
| Cow position: | chr2:50445740-50445515 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 37, 115 |
| Conread position: | 57-290 |
| Cow position: | chr2:69747775-69748015 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 37, 175 |
| Conread position: | 57-361 |
| Cow position: | chr2:37072659-37072332 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 114 |
| Conread position: | 57-367 |
| Cow position: | chr2:86100722-86100398 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 243 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 36, 114 |
| Conread position: | 57-376 |
| Cow position: | chr2:276545-276211 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 38, 115 |
| Conread position: | 57-376 |
| Cow position: | chr2:14710260-14710607 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 261 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 35, 293 |
| Conread position: | 57-376 |
| Cow position: | chr2:15059222-15059542 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 239 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 33, 90 |
| Conread position: | 57-376 |
| Cow position: | chr2:37121029-37120701 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 95 |
| Conread position: | 57-376 |
| Cow position: | chr2:50328337-50328001 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 55 |
| Conread position: | 57-376 |
| Cow position: | chr2:50352710-50352373 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 37, 257 |
| Conread position: | 57-378 |
| Cow position: | chr2:44170402-44170066 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 115 |
| Conread position: | 57-380 |
| Cow position: | chr2:31119861-31119520 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 96 |
| Conread position: | 58-380 |
| Cow position: | chr2:28681060-28681410 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 59-274 |
| Cow position: | chr2:1303794-1303571 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 31, 101 |
| Conread position: | 59-376 |
| Cow position: | chr2:76340815-76341157 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 291 |
| Conread position: | 60-274 |
| Cow position: | chr2:38628750-38628537 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 179 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 34, 73 |
| Conread position: | 62-272 |
| Cow position: | chr2:69776267-69776057 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 40 |
| Conread position: | 62-274 |
| Cow position: | chr2:59592905-59593131 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 179 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 62-376 |
| Cow position: | chr2:39385023-39385349 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 247 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 31, 71 |
Show alignments to all cow chromosomes.