Cow genome map
| Conread name: | Tra1-TCH01B120004 |
| Conread position: | 40-274 |
| Cow position: | chr3:73708889-73708657 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 15, 94 |
| Conread position: | 47-273 |
| Cow position: | chr3:79271961-79272190 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 46, 5 |
| Conread position: | 47-274 |
| Cow position: | chr3:48241455-48241219 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 188 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 9, 108 |
| Conread position: | 47-345 |
| Cow position: | chr3:51012699-51013023 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 13, 127 |
| Conread position: | 47-372 |
| Cow position: | chr3:57022406-57022071 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 86 |
| Conread position: | 47-376 |
| Cow position: | chr3:26920730-26920380 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 80 |
| Conread position: | 48-277 |
| Cow position: | chr3:47284668-47284434 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 45, 104 |
| Conread position: | 48-372 |
| Cow position: | chr3:14552711-14552368 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 122 |
| Conread position: | 48-376 |
| Cow position: | chr3:30701155-30700803 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 34, 173 |
| Conread position: | 50-364 |
| Cow position: | chr3:36656941-36657277 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 108 |
| Conread position: | 51-210 |
| Cow position: | chr3:81471273-81471436 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 43, 82 |
| Conread position: | 51-214 |
| Cow position: | chr3:83474575-83474406 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 42, 82 |
| Conread position: | 51-242 |
| Cow position: | chr3:79884659-79884857 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 42, 82 |
| Conread position: | 51-267 |
| Cow position: | chr3:15661872-15662094 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 42, 103 |
| Conread position: | 51-274 |
| Cow position: | chr3:4461661-4461891 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 43, 112 |
| Conread position: | 51-274 |
| Cow position: | chr3:29172211-29171981 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 42, 121 |
| Conread position: | 51-274 |
| Cow position: | chr3:41367156-41367385 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 43, 108 |
| Conread position: | 51-283 |
| Cow position: | chr3:39328228-39328000 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 179 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 72, 43 |
| Conread position: | 51-341 |
| Cow position: | chr3:2674857-2674548 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 121 |
| Conread position: | 51-357 |
| Cow position: | chr3:45881737-45881411 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 121 |
| Conread position: | 51-376 |
| Cow position: | chr3:7566591-7566930 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 246 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 42, 102 |
| Conread position: | 51-376 |
| Cow position: | chr3:48530465-48530124 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 120 |
| Conread position: | 51-376 |
| Cow position: | chr3:49218487-49218824 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 75 |
| Conread position: | 51-376 |
| Cow position: | chr3:55085356-55085705 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 208 |
| Conread position: | 51-378 |
| Cow position: | chr3:54960018-54959682 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 82 |
| Conread position: | 54-266 |
| Cow position: | chr3:50329250-50329470 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 38, 106 |
| Conread position: | 54-279 |
| Cow position: | chr3:79292659-79292420 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 39, 99 |
| Conread position: | 54-376 |
| Cow position: | chr3:30179908-30179567 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 98 |
| Conread position: | 57-214 |
| Cow position: | chr3:53508199-53508028 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 57-238 |
| Cow position: | chr3:79905102-79905279 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 77, 37 |
| Conread position: | 57-252 |
| Cow position: | chr3:35283276-35283466 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 37, 93 |
| Conread position: | 57-263 |
| Cow position: | chr3:31501169-31500963 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 36, 76 |
| Conread position: | 57-274 |
| Cow position: | chr3:14717628-14717411 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 180 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 52, 34 |
| Conread position: | 57-274 |
| Cow position: | chr3:20802808-20803030 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 35, 76 |
| Conread position: | 57-274 |
| Cow position: | chr3:21341144-21341366 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 100 |
| Conread position: | 57-274 |
| Cow position: | chr3:65968976-65968758 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 37, 101 |
| Conread position: | 57-274 |
| Cow position: | chr3:72675909-72675685 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 115 |
| Conread position: | 57-372 |
| Cow position: | chr3:9843405-9843062 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 57-375 |
| Cow position: | chr3:38347023-38346690 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 236 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 36, 96 |
| Conread position: | 57-376 |
| Cow position: | chr3:2335104-2334769 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 76 |
| Conread position: | 57-376 |
| Cow position: | chr3:14465886-14466219 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 99 |
| Conread position: | 57-376 |
| Cow position: | chr3:23169248-23169586 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 113 |
| Conread position: | 57-376 |
| Cow position: | chr3:26219240-26219576 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 73 |
| Conread position: | 57-376 |
| Cow position: | chr3:58540711-58541055 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 57-376 |
| Cow position: | chr3:79592067-79592403 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 115 |
| Conread position: | 58-219 |
| Cow position: | chr3:70895867-70895699 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 36, 115 |
| Conread position: | 59-225 |
| Cow position: | chr3:53572930-53573104 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 34, 113 |
| Conread position: | 59-371 |
| Cow position: | chr3:17331588-17331257 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 106 |
| Conread position: | 62-247 |
| Cow position: | chr3:13353174-13352984 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 31, 107 |
| Conread position: | 62-372 |
| Cow position: | chr3:35852651-35852988 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 248 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 31, 71 |
Show alignments to all cow chromosomes.