Cow genome map
| Conread name: | Tra1-TCH01B120004 |
| Conread position: | 36-372 |
| Cow position: | chr5:66257532-66257185 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 13 |
| Conread position: | 48-376 |
| Cow position: | chr5:56467582-56467239 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 245 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 46, 9 |
| Conread position: | 51-220 |
| Cow position: | chr5:19751729-19751558 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 42, 102 |
| Conread position: | 51-263 |
| Cow position: | chr5:20783501-20783284 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 42, 119 |
| Conread position: | 51-266 |
| Cow position: | chr5:42845724-42845946 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 42, 75 |
| Conread position: | 51-266 |
| Cow position: | chr5:58519528-58519746 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 175 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 41, 115 |
| Conread position: | 51-272 |
| Cow position: | chr5:32140831-32141051 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 41, 118 |
| Conread position: | 51-273 |
| Cow position: | chr5:63967770-63967994 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 43, 108 |
| Conread position: | 51-274 |
| Cow position: | chr5:46104059-46104294 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 51-274 |
| Cow position: | chr5:54311209-54310975 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 43, 214 |
| Conread position: | 51-279 |
| Cow position: | chr5:44752434-44752672 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 43, 82 |
| Conread position: | 51-348 |
| Cow position: | chr5:49559044-49558723 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 237 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 42, 110 |
| Conread position: | 51-372 |
| Cow position: | chr5:20407790-20408121 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 242 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 43, 118 |
| Conread position: | 51-376 |
| Cow position: | chr5:18574047-18573703 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 121 |
| Conread position: | 51-376 |
| Cow position: | chr5:41522919-41523252 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 239 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 42, 69 |
| Conread position: | 51-376 |
| Cow position: | chr5:58855980-58855638 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 82 |
| Conread position: | 53-376 |
| Cow position: | chr5:24348986-24348657 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 252 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 40, 100 |
| Conread position: | 57-228 |
| Cow position: | chr5:65752727-65752551 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 33, 100 |
| Conread position: | 57-234 |
| Cow position: | chr5:65941383-65941566 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 35, 112 |
| Conread position: | 57-253 |
| Cow position: | chr5:45225954-45226162 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 57-267 |
| Cow position: | chr5:51357633-51357849 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 36, 96 |
| Conread position: | 57-268 |
| Cow position: | chr5:35145223-35145002 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 174 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 37, 119 |
| Conread position: | 57-268 |
| Cow position: | chr5:58793744-58793962 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 174 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 37, 103 |
| Conread position: | 57-274 |
| Cow position: | chr5:60015790-60015569 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 36, 113 |
| Conread position: | 57-274 |
| Cow position: | chr5:72564632-72564405 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 36, 118 |
| Conread position: | 57-329 |
| Cow position: | chr5:56524042-56523754 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 74 |
| Conread position: | 57-355 |
| Cow position: | chr5:46509996-46510313 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 36, 116 |
| Conread position: | 57-366 |
| Cow position: | chr5:15598363-15598690 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 117 |
| Conread position: | 57-372 |
| Cow position: | chr5:15363761-15363431 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 96 |
| Conread position: | 57-372 |
| Cow position: | chr5:21828735-21828393 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 247 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 57-372 |
| Cow position: | chr5:30302766-30302435 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 65 |
| Conread position: | 57-372 |
| Cow position: | chr5:64823442-64823765 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 244 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 36, 76 |
| Conread position: | 57-375 |
| Cow position: | chr5:50637700-50637372 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 113 |
| Conread position: | 57-376 |
| Cow position: | chr5:9090153-9090472 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 37, 95 |
| Conread position: | 57-376 |
| Cow position: | chr5:26467490-26467155 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 66 |
| Conread position: | 57-376 |
| Cow position: | chr5:27015551-27015226 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 37 |
| Conread position: | 57-380 |
| Cow position: | chr5:6045158-6044814 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 116 |
| Conread position: | 57-380 |
| Cow position: | chr5:15478984-15478637 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 250 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 36, 191 |
| Conread position: | 62-274 |
| Cow position: | chr5:14538791-14539003 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 73, 64 |
Show alignments to all cow chromosomes.