Cow genome map
| Conread name: | Tra1-TCH01B120004 |
| Conread position: | 39-268 |
| Cow position: | chr9:53257894-53257667 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 40-272 |
| Cow position: | chr9:5594665-5594904 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 190 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 13, 134 |
| Conread position: | 47-376 |
| Cow position: | chr9:5161892-5161548 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 46, 120 |
| Conread position: | 48-373 |
| Cow position: | chr9:5246023-5246366 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 248 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 11, 86 |
| Conread position: | 48-376 |
| Cow position: | chr9:5501025-5501361 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 121 |
| Conread position: | 48-376 |
| Cow position: | chr9:24726503-24726157 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 124 |
| Conread position: | 48-376 |
| Cow position: | chr9:28726548-28726207 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 117 |
| Conread position: | 51-196 |
| Cow position: | chr9:52484739-52484590 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 42, 99 |
| Conread position: | 51-209 |
| Cow position: | chr9:9199606-9199441 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 40, 82 |
| Conread position: | 51-223 |
| Cow position: | chr9:38344072-38344253 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 42, 103 |
| Conread position: | 51-271 |
| Cow position: | chr9:20738880-20739110 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 39, 118 |
| Conread position: | 51-272 |
| Cow position: | chr9:21888347-21888576 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 41, 121 |
| Conread position: | 51-274 |
| Cow position: | chr9:5141258-5141482 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 68, 114 |
| Conread position: | 51-274 |
| Cow position: | chr9:42498007-42498237 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 121 |
| Conread position: | 51-290 |
| Cow position: | chr9:27697552-27697306 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 187 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 42, 103 |
| Conread position: | 51-369 |
| Cow position: | chr9:20989276-20988927 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 43, 108 |
| Conread position: | 51-370 |
| Cow position: | chr9:7409960-7410295 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 121 |
| Conread position: | 51-372 |
| Cow position: | chr9:42585446-42585111 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 115 |
| Conread position: | 51-376 |
| Cow position: | chr9:9443419-9443076 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 41, 126 |
| Conread position: | 51-376 |
| Cow position: | chr9:37017062-37017406 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 121 |
| Conread position: | 51-376 |
| Cow position: | chr9:48017645-48017302 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 109 |
| Conread position: | 52-273 |
| Cow position: | chr9:53602592-53602817 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 40, 119 |
| Conread position: | 54-274 |
| Cow position: | chr9:17568319-17568546 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 39, 133 |
| Conread position: | 54-274 |
| Cow position: | chr9:26099518-26099750 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 183 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 40, 220 |
| Conread position: | 54-290 |
| Cow position: | chr9:9552268-9552509 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 37, 99 |
| Conread position: | 54-380 |
| Cow position: | chr9:26477741-26478082 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 249 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 38, 99 |
| Conread position: | 57-353 |
| Cow position: | chr9:20416325-20416011 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 114 |
| Conread position: | 57-372 |
| Cow position: | chr9:44822118-44821787 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 241 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 36, 95 |
| Conread position: | 57-372 |
| Cow position: | chr9:45756544-45756880 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 237 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 37, 100 |
| Conread position: | 57-375 |
| Cow position: | chr9:22361199-22361534 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 68 |
| Conread position: | 57-376 |
| Cow position: | chr9:1855464-1855797 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 247 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 37, 76 |
| Conread position: | 57-376 |
| Cow position: | chr9:15805737-15805403 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 248 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 36, 115 |
| Conread position: | 57-376 |
| Cow position: | chr9:32812532-32812856 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 113 |
| Conread position: | 57-376 |
| Cow position: | chr9:52407354-52407684 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 115 |
| Conread position: | 58-376 |
| Cow position: | chr9:33100955-33100632 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 35, 73 |
| Conread position: | 60-372 |
| Cow position: | chr9:31077491-31077160 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 112 |
| Conread position: | 62-228 |
| Cow position: | chr9:58439592-58439423 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 31, 71 |
| Conread position: | 62-238 |
| Cow position: | chr9:41485810-41485646 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 73, 32 |
| Conread position: | 62-375 |
| Cow position: | chr9:39971228-39971554 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 104 |
| Conread position: | 63-370 |
| Cow position: | chr9:17740754-17740432 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 91 |
Show alignments to all cow chromosomes.