Cow genome map
| Conread name: | Tra1-TCH01C040031 |
| Conread position: | 175-812 |
| Cow position: | chr12:8311427-8310790 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 186 |
| Conread position: | 176-795 |
| Cow position: | chr12:28765774-28766393 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 183 |
| Conread position: | 176-810 |
| Cow position: | chr12:20997888-20998513 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 63 |
| Conread position: | 176-812 |
| Cow position: | chr12:251813-252451 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 75 |
| Conread position: | 176-812 |
| Cow position: | chr12:1402735-1402099 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 28 |
| Conread position: | 176-812 |
| Cow position: | chr12:6406406-6407037 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 54 |
| Conread position: | 176-812 |
| Cow position: | chr12:8677876-8678513 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 188 |
| Conread position: | 176-812 |
| Cow position: | chr12:11098487-11097847 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 62 |
| Conread position: | 176-812 |
| Cow position: | chr12:22205503-22206139 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 33 |
| Conread position: | 176-812 |
| Cow position: | chr12:25100816-25101458 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 182 |
| Conread position: | 176-812 |
| Cow position: | chr12:27932700-27933340 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 187 |
| Conread position: | 177-810 |
| Cow position: | chr12:14662389-14663002 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 182 |
| Conread position: | 177-812 |
| Cow position: | chr12:42859583-42860209 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 186 |
| Conread position: | 178-339 |
| Cow position: | chr12:23240246-23240084 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 50, 90 |
| Conread position: | 178-364 |
| Cow position: | chr12:5861396-5861210 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 50, 16 |
| Conread position: | 178-443 |
| Cow position: | chr12:21198203-21197935 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 52, 182 |
| Conread position: | 178-725 |
| Cow position: | chr12:21500345-21499812 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 359 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 49, 16 |
| Conread position: | 178-779 |
| Cow position: | chr12:21254413-21255016 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 161 |
| Conread position: | 178-791 |
| Cow position: | chr12:16294173-16293550 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 390 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 82, 27 |
| Conread position: | 178-799 |
| Cow position: | chr12:45261866-45261225 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 186 |
| Conread position: | 178-804 |
| Cow position: | chr12:43031142-43031762 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 95 |
| Conread position: | 178-809 |
| Cow position: | chr12:37558799-37558168 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 182 |
| Conread position: | 178-810 |
| Cow position: | chr12:32653787-32653155 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 181 |
| Conread position: | 178-812 |
| Cow position: | chr12:2282789-2282154 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 181 |
| Conread position: | 178-812 |
| Cow position: | chr12:21902182-21901559 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 38 |
| Conread position: | 178-812 |
| Cow position: | chr12:22332867-22332225 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 144 |
| Conread position: | 183-425 |
| Cow position: | chr12:33986400-33986157 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 176 |
| Conread position: | 183-810 |
| Cow position: | chr12:3361142-3360521 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 176 |
| Conread position: | 183-810 |
| Cow position: | chr12:21426932-21426311 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 176 |
| Conread position: | 184-804 |
| Cow position: | chr12:3037-2412 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 178 |
| Conread position: | 184-812 |
| Cow position: | chr12:15951026-15951647 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 13 |
| Conread position: | 185-531 |
| Cow position: | chr12:18501267-18500941 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 243 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 197, 44 |
| Conread position: | 191-469 |
| Cow position: | chr12:2838625-2838903 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 203 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 26, 18 |
| Conread position: | 196-812 |
| Cow position: | chr12:21941989-21941385 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 8 |
| Conread position: | 197-641 |
| Cow position: | chr12:26946761-26947202 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 168 |
| Conread position: | 221-811 |
| Cow position: | chr12:10484229-10483654 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 373 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 50, 89 |
| Conread position: | 245-810 |
| Cow position: | chr12:21207868-21207305 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 112 |
| Conread position: | 248-459 |
| Cow position: | chr12:48405443-48405232 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 93, 114 |
| Conread position: | 258-686 |
| Cow position: | chr12:8982263-8982680 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 290 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 124, 65 |
| Conread position: | 262-724 |
| Cow position: | chr12:347986-347531 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 102 |
| Conread position: | 271-809 |
| Cow position: | chr12:26141962-26141422 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 88 |
| Conread position: | 272-812 |
| Cow position: | chr12:16326845-16326344 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 344 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 110, 61 |
| Conread position: | 431-812 |
| Cow position: | chr12:48405033-48404656 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 43 |
| Conread position: | 475-812 |
| Cow position: | chr12:21197772-21197438 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 14 |
| Conread position: | 491-641 |
| Cow position: | chr12:42420190-42420343 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 532-731 |
| Cow position: | chr12:601168-601363 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 575-812 |
| Cow position: | chr12:2839750-2839980 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 615-792 |
| Cow position: | chr12:42420606-42420784 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 106, 0 |
Show alignments to all cow chromosomes.