Cow genome map
| Conread name: | Tra1-TCH01C040031 |
| Conread position: | 166-812 |
| Cow position: | chr13:2908415-2909059 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 194 |
| Conread position: | 175-812 |
| Cow position: | chr13:15520490-15521129 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 188 |
| Conread position: | 175-812 |
| Cow position: | chr13:35757266-35756616 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 184 |
| Conread position: | 176-339 |
| Cow position: | chr13:32545083-32544918 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 176-789 |
| Cow position: | chr13:9044524-9043919 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 186 |
| Conread position: | 176-809 |
| Cow position: | chr13:1593131-1593768 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 183 |
| Conread position: | 176-812 |
| Cow position: | chr13:4941112-4940471 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 187 |
| Conread position: | 176-812 |
| Cow position: | chr13:15924360-15924998 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 187 |
| Conread position: | 176-812 |
| Cow position: | chr13:34042345-34042978 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 180 |
| Conread position: | 176-812 |
| Cow position: | chr13:34911355-34911979 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 89 |
| Conread position: | 178-323 |
| Cow position: | chr13:676898-676751 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 178-333 |
| Cow position: | chr13:34868764-34868605 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 44, 69 |
| Conread position: | 178-369 |
| Cow position: | chr13:3058088-3058281 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 44, 182 |
| Conread position: | 178-369 |
| Cow position: | chr13:60466359-60466167 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 152 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 44, 181 |
| Conread position: | 178-413 |
| Cow position: | chr13:3338810-3338573 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 45, 182 |
| Conread position: | 178-428 |
| Cow position: | chr13:4483816-4483569 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 186 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 178-434 |
| Cow position: | chr13:4178629-4178886 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 44, 181 |
| Conread position: | 178-443 |
| Cow position: | chr13:46732206-46732465 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 250, 172 |
| Conread position: | 178-469 |
| Cow position: | chr13:16343196-16343484 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 35, 74 |
| Conread position: | 178-557 |
| Cow position: | chr13:3567816-3567425 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 192 |
| Conread position: | 178-588 |
| Cow position: | chr13:30064144-30063743 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 73 |
| Conread position: | 178-655 |
| Cow position: | chr13:49973706-49973225 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 185 |
| Conread position: | 178-687 |
| Cow position: | chr13:56730265-56730762 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 155 |
| Conread position: | 178-692 |
| Cow position: | chr13:13324771-13324263 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 181 |
| Conread position: | 178-787 |
| Cow position: | chr13:34693187-34692573 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 185 |
| Conread position: | 178-789 |
| Cow position: | chr13:34325653-34326268 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 142 |
| Conread position: | 178-793 |
| Cow position: | chr13:32986035-32986642 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 77 |
| Conread position: | 178-804 |
| Cow position: | chr13:33927565-33928157 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 88 |
| Conread position: | 178-809 |
| Cow position: | chr13:4873098-4872467 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 68 |
| Conread position: | 178-810 |
| Cow position: | chr13:2388796-2389409 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 185 |
| Conread position: | 178-810 |
| Cow position: | chr13:17308497-17307872 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 181 |
| Conread position: | 178-810 |
| Cow position: | chr13:21840172-21840809 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 185 |
| Conread position: | 178-810 |
| Cow position: | chr13:31734063-31734685 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 128 |
| Conread position: | 178-810 |
| Cow position: | chr13:50109484-50108853 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 171 |
| Conread position: | 178-812 |
| Cow position: | chr13:3277176-3276544 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 185 |
| Conread position: | 178-812 |
| Cow position: | chr13:3654304-3654921 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 116 |
| Conread position: | 178-812 |
| Cow position: | chr13:20542353-20542976 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 128 |
| Conread position: | 178-812 |
| Cow position: | chr13:30656955-30657576 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 104 |
| Conread position: | 178-812 |
| Cow position: | chr13:31612314-31612950 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 78 |
| Conread position: | 178-812 |
| Cow position: | chr13:32737800-32738423 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 178 |
| Conread position: | 178-812 |
| Cow position: | chr13:33824713-33825352 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 98 |
| Conread position: | 178-812 |
| Cow position: | chr13:34142636-34143274 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 184 |
| Conread position: | 178-812 |
| Cow position: | chr13:34937170-34936525 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 186 |
| Conread position: | 178-812 |
| Cow position: | chr13:54284592-54283980 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 141 |
| Conread position: | 178-812 |
| Cow position: | chr13:62327562-62328194 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 183 |
| Conread position: | 179-808 |
| Cow position: | chr13:31832621-31831998 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 180 |
| Conread position: | 179-812 |
| Cow position: | chr13:34186666-34187303 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 67 |
| Conread position: | 180-622 |
| Cow position: | chr13:35030571-35030124 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 18 |
| Conread position: | 180-812 |
| Cow position: | chr13:33336328-33336940 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 19 |
| Conread position: | 183-809 |
| Cow position: | chr13:22185721-22186327 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 399 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 6, 21 |
| Conread position: | 183-810 |
| Cow position: | chr13:6668106-6668737 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 180 |
| Conread position: | 184-728 |
| Cow position: | chr13:58262123-58261586 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 350 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 43, 68 |
| Conread position: | 187-493 |
| Cow position: | chr13:47229974-47230279 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 172 |
| Conread position: | 196-563 |
| Cow position: | chr13:34767288-34767641 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 13 |
| Conread position: | 196-716 |
| Cow position: | chr13:2306498-2305985 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 338 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 31, 138 |
| Conread position: | 197-810 |
| Cow position: | chr13:2296808-2297410 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 90 |
| Conread position: | 209-648 |
| Cow position: | chr13:23003527-23003966 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 139 |
| Conread position: | 221-739 |
| Cow position: | chr13:21131298-21130789 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 344 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 23, 50 |
| Conread position: | 223-767 |
| Cow position: | chr13:19438909-19438380 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 356 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 87, 134 |
| Conread position: | 231-484 |
| Cow position: | chr13:41311794-41312049 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 15, 25 |
| Conread position: | 238-376 |
| Cow position: | chr13:30238078-30237941 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 245-810 |
| Cow position: | chr13:30244780-30245347 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 116 |
| Conread position: | 251-731 |
| Cow position: | chr13:38441478-38441942 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 310 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 59, 111 |
| Conread position: | 269-717 |
| Cow position: | chr13:5718897-5718471 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 295 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 41, 98 |
| Conread position: | 270-809 |
| Cow position: | chr13:30140923-30140382 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 93 |
| Conread position: | 291-634 |
| Cow position: | chr13:2583399-2583738 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 19, 30 |
| Conread position: | 293-498 |
| Cow position: | chr13:10114748-10114949 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 19, 41 |
| Conread position: | 318-812 |
| Cow position: | chr13:30302944-30302457 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 45 |
| Conread position: | 320-812 |
| Cow position: | chr13:48357183-48356719 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 42 |
| Conread position: | 348-576 |
| Cow position: | chr13:15451649-15451863 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 34, 13 |
| Conread position: | 361-812 |
| Cow position: | chr13:2232498-2232058 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 39 |
| Conread position: | 365-810 |
| Cow position: | chr13:34868607-34868159 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 43 |
| Conread position: | 398-812 |
| Cow position: | chr13:32544742-32544333 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 91 |
| Conread position: | 406-812 |
| Cow position: | chr13:30237959-30237563 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 284 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 128, 13 |
| Conread position: | 469-812 |
| Cow position: | chr13:4482201-4481861 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 20 |
| Conread position: | 489-810 |
| Cow position: | chr13:3058281-3058606 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 517-812 |
| Cow position: | chr13:13046141-13046435 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 112 |
| Conread position: | 538-812 |
| Cow position: | chr13:15543125-15542850 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 188, 0 |
| Conread position: | 572-721 |
| Cow position: | chr13:32606548-32606697 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 583-810 |
| Cow position: | chr13:35030126-35029910 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 187, 46 |
| Conread position: | 636-809 |
| Cow position: | chr13:53834334-53834160 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 90, 100 |
| Conread position: | 670-809 |
| Cow position: | chr13:61951719-61951581 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 56, 97 |
Show alignments to all cow chromosomes.