Cow genome map

Conread name: Tra1-TCH01C040031

Conread position: 176-434
Cow position: chr17:40804949-40804689 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 184

Conread position: 176-482
Cow position: chr17:2579747-2579457 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 225
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 46, 73

Conread position: 176-640
Cow position: chr17:6259976-6259510 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 71

Conread position: 176-781
Cow position: chr17:15850529-15849923 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 188

Conread position: 176-811
Cow position: chr17:19269234-19269868 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 183

Conread position: 176-811
Cow position: chr17:25737795-25737157 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 183

Conread position: 176-812
Cow position: chr17:3642704-3643343 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 187

Conread position: 176-812
Cow position: chr17:11087592-11088228 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 187

Conread position: 176-812
Cow position: chr17:13856637-13857281 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 187

Conread position: 176-812
Cow position: chr17:13929800-13929166 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 187

Conread position: 176-812
Cow position: chr17:14894285-14893650 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 158

Conread position: 176-812
Cow position: chr17:18103553-18104188 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 52

Conread position: 178-325
Cow position: chr17:34156258-34156109 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 118
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 44, 0

Conread position: 178-336
Cow position: chr17:31767909-31768069 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 128
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 44, 0

Conread position: 178-336
Cow position: chr17:43952433-43952592 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 44, 143

Conread position: 178-357
Cow position: chr17:1283575-1283756 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 138
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 44, 0

Conread position: 178-380
Cow position: chr17:15371177-15370977 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 152
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 98, 27

Conread position: 178-405
Cow position: chr17:602308-602522 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 169
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 44, 128

Conread position: 178-575
Cow position: chr17:18026627-18027027 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 181

Conread position: 178-625
Cow position: chr17:20087617-20088050 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 43

Conread position: 178-641
Cow position: chr17:22132358-22131898 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 110

Conread position: 178-654
Cow position: chr17:16417708-16418186 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 308
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 132, 90

Conread position: 178-690
Cow position: chr17:18185405-18185909 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 66

Conread position: 178-692
Cow position: chr17:1947099-1946589 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 121

Conread position: 178-728
Cow position: chr17:43988663-43988116 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 156

Conread position: 178-755
Cow position: chr17:42264631-42264083 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 50

Conread position: 178-773
Cow position: chr17:1880224-1879623 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 167

Conread position: 178-789
Cow position: chr17:152346-152941 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 88

Conread position: 178-806
Cow position: chr17:2174008-2173381 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 185

Conread position: 178-809
Cow position: chr17:1382684-1383316 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 181

Conread position: 178-809
Cow position: chr17:23856904-23857547 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 181

Conread position: 178-810
Cow position: chr17:228178-228801 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 155

Conread position: 178-810
Cow position: chr17:2262232-2261611 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 25

Conread position: 178-810
Cow position: chr17:9653326-9653955 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 171

Conread position: 178-810
Cow position: chr17:15143237-15143866 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 181

Conread position: 178-810
Cow position: chr17:15156834-15157458 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 144

Conread position: 178-810
Cow position: chr17:15435921-15435289 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 181

Conread position: 178-810
Cow position: chr17:20665596-20666232 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 185

Conread position: 178-811
Cow position: chr17:4081758-4081145 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 74

Conread position: 178-811
Cow position: chr17:4295474-4294877 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 63

Conread position: 178-812
Cow position: chr17:2287516-2286869 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 181

Conread position: 178-812
Cow position: chr17:4060229-4059599 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 59

Conread position: 178-812
Cow position: chr17:14325383-14325998 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 49

Conread position: 178-812
Cow position: chr17:16890254-16889623 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 188

Conread position: 178-812
Cow position: chr17:20401791-20401168 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 89

Conread position: 178-812
Cow position: chr17:27345928-27345300 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 183

Conread position: 178-812
Cow position: chr17:35592344-35591717 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 186

Conread position: 178-812
Cow position: chr17:44852803-44853431 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 25

Conread position: 179-329
Cow position: chr17:15323374-15323223 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 43, 78

Conread position: 180-724
Cow position: chr17:2588431-2587917 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 69

Conread position: 183-329
Cow position: chr17:22557747-22557599 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 39, 80

Conread position: 183-479
Cow position: chr17:181488-181191 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 185
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 39, 176

Conread position: 183-719
Cow position: chr17:23324329-23324857 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 178

Conread position: 183-787
Cow position: chr17:6089036-6089644 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 178

Conread position: 183-809
Cow position: chr17:24634079-24633452 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 176

Conread position: 183-810
Cow position: chr17:2248459-2249087 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 180

Conread position: 183-810
Cow position: chr17:14216898-14217530 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 181

Conread position: 184-812
Cow position: chr17:8209230-8208603 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 179

Conread position: 185-811
Cow position: chr17:6001895-6002520 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 104

Conread position: 188-295
Cow position: chr17:602803-602694 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 188-561
Cow position: chr17:2556242-2555867 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 116

Conread position: 191-812
Cow position: chr17:16859451-16860077 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 37

Conread position: 194-322
Cow position: chr17:36987557-36987687 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 105
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 28, 0

Conread position: 196-721
Cow position: chr17:20183119-20183642 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 159

Conread position: 199-707
Cow position: chr17:4287187-4286694 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 317
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 112, 15

Conread position: 200-810
Cow position: chr17:250047-249423 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 143

Conread position: 201-782
Cow position: chr17:22429387-22429959 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 88

Conread position: 212-385
Cow position: chr17:26205711-26205886 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 134
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 10, 147

Conread position: 230-454
Cow position: chr17:39933731-39933511 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 163
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 91, 57

Conread position: 245-810
Cow position: chr17:24781109-24780542 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 116

Conread position: 263-811
Cow position: chr17:14308270-14308812 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 354
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 119, 85

Conread position: 267-456
Cow position: chr17:31199611-31199792 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 149
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 115, 28

Conread position: 281-810
Cow position: chr17:22160941-22160410 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 80

Conread position: 327-812
Cow position: chr17:15322788-15322323 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 34

Conread position: 365-812
Cow position: chr17:1283846-1284264 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 35

Conread position: 375-812
Cow position: chr17:28110017-28109588 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 17

Conread position: 407-808
Cow position: chr17:15370972-15370576 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 49

Conread position: 409-812
Cow position: chr17:2579455-2579054 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 31

Conread position: 429-783
Cow position: chr17:2147079-2146732 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 240
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 17, 57

Conread position: 430-812
Cow position: chr17:40804270-40803899 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 22

Conread position: 476-778
Cow position: chr17:2738209-2737905 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 16

Conread position: 476-812
Cow position: chr17:39933514-39933180 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 230
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 58, 98

Conread position: 508-810
Cow position: chr17:11783171-11782865 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 592-812
Cow position: chr17:32024483-32024703 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 52

Conread position: 615-810
Cow position: chr17:6259392-6259198 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 138
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 17, 52

Conread position: 615-812
Cow position: chr17:22131632-22131433 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 141
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 106, 0

Conread position: 619-802
Cow position: chr17:20088065-20088253 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 134
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 14, 0

Conread position: 651-812
Cow position: chr17:6119805-6119643 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 115
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 70, 0

Show alignments to all cow chromosomes.