Cow genome map
Conread name: | Tra1-TCH01C040031 |
Conread position: | 176-434 |
Cow position: | chr17:40804949-40804689 (view UCSC Genome Browser custom track) |
Alignm length: | 263 |
Alignm identity: | 202 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 184 |
Conread position: | 176-482 |
Cow position: | chr17:2579747-2579457 (view UCSC Genome Browser custom track) |
Alignm length: | 310 |
Alignm identity: | 225 |
Alignm E-value: | 9.99967e-42 |
Alignm gaps (pig, cow): | 46, 73 |
Conread position: | 176-640 |
Cow position: | chr17:6259976-6259510 (view UCSC Genome Browser custom track) |
Alignm length: | 472 |
Alignm identity: | 354 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 71 |
Conread position: | 176-781 |
Cow position: | chr17:15850529-15849923 (view UCSC Genome Browser custom track) |
Alignm length: | 617 |
Alignm identity: | 447 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 188 |
Conread position: | 176-811 |
Cow position: | chr17:19269234-19269868 (view UCSC Genome Browser custom track) |
Alignm length: | 645 |
Alignm identity: | 471 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 183 |
Conread position: | 176-811 |
Cow position: | chr17:25737795-25737157 (view UCSC Genome Browser custom track) |
Alignm length: | 643 |
Alignm identity: | 474 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 183 |
Conread position: | 176-812 |
Cow position: | chr17:3642704-3643343 (view UCSC Genome Browser custom track) |
Alignm length: | 645 |
Alignm identity: | 469 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 187 |
Conread position: | 176-812 |
Cow position: | chr17:11087592-11088228 (view UCSC Genome Browser custom track) |
Alignm length: | 643 |
Alignm identity: | 481 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 187 |
Conread position: | 176-812 |
Cow position: | chr17:13856637-13857281 (view UCSC Genome Browser custom track) |
Alignm length: | 649 |
Alignm identity: | 474 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 187 |
Conread position: | 176-812 |
Cow position: | chr17:13929800-13929166 (view UCSC Genome Browser custom track) |
Alignm length: | 644 |
Alignm identity: | 481 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 187 |
Conread position: | 176-812 |
Cow position: | chr17:14894285-14893650 (view UCSC Genome Browser custom track) |
Alignm length: | 650 |
Alignm identity: | 474 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 158 |
Conread position: | 176-812 |
Cow position: | chr17:18103553-18104188 (view UCSC Genome Browser custom track) |
Alignm length: | 642 |
Alignm identity: | 473 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 205, 52 |
Conread position: | 178-325 |
Cow position: | chr17:34156258-34156109 (view UCSC Genome Browser custom track) |
Alignm length: | 150 |
Alignm identity: | 118 |
Alignm E-value: | 3e-30 |
Alignm gaps (pig, cow): | 44, 0 |
Conread position: | 178-336 |
Cow position: | chr17:31767909-31768069 (view UCSC Genome Browser custom track) |
Alignm length: | 161 |
Alignm identity: | 128 |
Alignm E-value: | 2e-34 |
Alignm gaps (pig, cow): | 44, 0 |
Conread position: | 178-336 |
Cow position: | chr17:43952433-43952592 (view UCSC Genome Browser custom track) |
Alignm length: | 161 |
Alignm identity: | 124 |
Alignm E-value: | 9e-30 |
Alignm gaps (pig, cow): | 44, 143 |
Conread position: | 178-357 |
Cow position: | chr17:1283575-1283756 (view UCSC Genome Browser custom track) |
Alignm length: | 182 |
Alignm identity: | 138 |
Alignm E-value: | 5e-34 |
Alignm gaps (pig, cow): | 44, 0 |
Conread position: | 178-380 |
Cow position: | chr17:15371177-15370977 (view UCSC Genome Browser custom track) |
Alignm length: | 204 |
Alignm identity: | 152 |
Alignm E-value: | 2e-34 |
Alignm gaps (pig, cow): | 98, 27 |
Conread position: | 178-405 |
Cow position: | chr17:602308-602522 (view UCSC Genome Browser custom track) |
Alignm length: | 231 |
Alignm identity: | 169 |
Alignm E-value: | 9e-30 |
Alignm gaps (pig, cow): | 44, 128 |
Conread position: | 178-575 |
Cow position: | chr17:18026627-18027027 (view UCSC Genome Browser custom track) |
Alignm length: | 404 |
Alignm identity: | 302 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 181 |
Conread position: | 178-625 |
Cow position: | chr17:20087617-20088050 (view UCSC Genome Browser custom track) |
Alignm length: | 452 |
Alignm identity: | 329 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 202, 43 |
Conread position: | 178-641 |
Cow position: | chr17:22132358-22131898 (view UCSC Genome Browser custom track) |
Alignm length: | 468 |
Alignm identity: | 348 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 110 |
Conread position: | 178-654 |
Cow position: | chr17:16417708-16418186 (view UCSC Genome Browser custom track) |
Alignm length: | 490 |
Alignm identity: | 308 |
Alignm E-value: | 3e-31 |
Alignm gaps (pig, cow): | 132, 90 |
Conread position: | 178-690 |
Cow position: | chr17:18185405-18185909 (view UCSC Genome Browser custom track) |
Alignm length: | 520 |
Alignm identity: | 377 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 66 |
Conread position: | 178-692 |
Cow position: | chr17:1947099-1946589 (view UCSC Genome Browser custom track) |
Alignm length: | 522 |
Alignm identity: | 385 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 50, 121 |
Conread position: | 178-728 |
Cow position: | chr17:43988663-43988116 (view UCSC Genome Browser custom track) |
Alignm length: | 559 |
Alignm identity: | 410 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 156 |
Conread position: | 178-755 |
Cow position: | chr17:42264631-42264083 (view UCSC Genome Browser custom track) |
Alignm length: | 579 |
Alignm identity: | 393 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 94, 50 |
Conread position: | 178-773 |
Cow position: | chr17:1880224-1879623 (view UCSC Genome Browser custom track) |
Alignm length: | 608 |
Alignm identity: | 437 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 50, 167 |
Conread position: | 178-789 |
Cow position: | chr17:152346-152941 (view UCSC Genome Browser custom track) |
Alignm length: | 626 |
Alignm identity: | 442 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 88 |
Conread position: | 178-806 |
Cow position: | chr17:2174008-2173381 (view UCSC Genome Browser custom track) |
Alignm length: | 638 |
Alignm identity: | 462 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 185 |
Conread position: | 178-809 |
Cow position: | chr17:1382684-1383316 (view UCSC Genome Browser custom track) |
Alignm length: | 640 |
Alignm identity: | 478 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 181 |
Conread position: | 178-809 |
Cow position: | chr17:23856904-23857547 (view UCSC Genome Browser custom track) |
Alignm length: | 648 |
Alignm identity: | 485 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 181 |
Conread position: | 178-810 |
Cow position: | chr17:228178-228801 (view UCSC Genome Browser custom track) |
Alignm length: | 639 |
Alignm identity: | 469 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 155 |
Conread position: | 178-810 |
Cow position: | chr17:2262232-2261611 (view UCSC Genome Browser custom track) |
Alignm length: | 640 |
Alignm identity: | 463 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 25 |
Conread position: | 178-810 |
Cow position: | chr17:9653326-9653955 (view UCSC Genome Browser custom track) |
Alignm length: | 640 |
Alignm identity: | 478 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 171 |
Conread position: | 178-810 |
Cow position: | chr17:15143237-15143866 (view UCSC Genome Browser custom track) |
Alignm length: | 648 |
Alignm identity: | 461 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 181 |
Conread position: | 178-810 |
Cow position: | chr17:15156834-15157458 (view UCSC Genome Browser custom track) |
Alignm length: | 638 |
Alignm identity: | 468 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 144 |
Conread position: | 178-810 |
Cow position: | chr17:15435921-15435289 (view UCSC Genome Browser custom track) |
Alignm length: | 640 |
Alignm identity: | 475 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 50, 181 |
Conread position: | 178-810 |
Cow position: | chr17:20665596-20666232 (view UCSC Genome Browser custom track) |
Alignm length: | 640 |
Alignm identity: | 465 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 185 |
Conread position: | 178-811 |
Cow position: | chr17:4081758-4081145 (view UCSC Genome Browser custom track) |
Alignm length: | 640 |
Alignm identity: | 459 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 134, 74 |
Conread position: | 178-811 |
Cow position: | chr17:4295474-4294877 (view UCSC Genome Browser custom track) |
Alignm length: | 639 |
Alignm identity: | 431 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 63 |
Conread position: | 178-812 |
Cow position: | chr17:2287516-2286869 (view UCSC Genome Browser custom track) |
Alignm length: | 654 |
Alignm identity: | 484 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 50, 181 |
Conread position: | 178-812 |
Cow position: | chr17:4060229-4059599 (view UCSC Genome Browser custom track) |
Alignm length: | 643 |
Alignm identity: | 474 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 59 |
Conread position: | 178-812 |
Cow position: | chr17:14325383-14325998 (view UCSC Genome Browser custom track) |
Alignm length: | 639 |
Alignm identity: | 468 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 204, 49 |
Conread position: | 178-812 |
Cow position: | chr17:16890254-16889623 (view UCSC Genome Browser custom track) |
Alignm length: | 644 |
Alignm identity: | 483 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 188 |
Conread position: | 178-812 |
Cow position: | chr17:20401791-20401168 (view UCSC Genome Browser custom track) |
Alignm length: | 657 |
Alignm identity: | 439 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 89 |
Conread position: | 178-812 |
Cow position: | chr17:27345928-27345300 (view UCSC Genome Browser custom track) |
Alignm length: | 643 |
Alignm identity: | 484 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 50, 183 |
Conread position: | 178-812 |
Cow position: | chr17:35592344-35591717 (view UCSC Genome Browser custom track) |
Alignm length: | 642 |
Alignm identity: | 476 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 186 |
Conread position: | 178-812 |
Cow position: | chr17:44852803-44853431 (view UCSC Genome Browser custom track) |
Alignm length: | 645 |
Alignm identity: | 456 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 25 |
Conread position: | 179-329 |
Cow position: | chr17:15323374-15323223 (view UCSC Genome Browser custom track) |
Alignm length: | 153 |
Alignm identity: | 116 |
Alignm E-value: | 6e-26 |
Alignm gaps (pig, cow): | 43, 78 |
Conread position: | 180-724 |
Cow position: | chr17:2588431-2587917 (view UCSC Genome Browser custom track) |
Alignm length: | 546 |
Alignm identity: | 376 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 202, 69 |
Conread position: | 183-329 |
Cow position: | chr17:22557747-22557599 (view UCSC Genome Browser custom track) |
Alignm length: | 151 |
Alignm identity: | 114 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 39, 80 |
Conread position: | 183-479 |
Cow position: | chr17:181488-181191 (view UCSC Genome Browser custom track) |
Alignm length: | 300 |
Alignm identity: | 185 |
Alignm E-value: | 9.94922e-44 |
Alignm gaps (pig, cow): | 39, 176 |
Conread position: | 183-719 |
Cow position: | chr17:23324329-23324857 (view UCSC Genome Browser custom track) |
Alignm length: | 543 |
Alignm identity: | 390 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 178 |
Conread position: | 183-787 |
Cow position: | chr17:6089036-6089644 (view UCSC Genome Browser custom track) |
Alignm length: | 613 |
Alignm identity: | 455 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 178 |
Conread position: | 183-809 |
Cow position: | chr17:24634079-24633452 (view UCSC Genome Browser custom track) |
Alignm length: | 635 |
Alignm identity: | 473 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 176 |
Conread position: | 183-810 |
Cow position: | chr17:2248459-2249087 (view UCSC Genome Browser custom track) |
Alignm length: | 636 |
Alignm identity: | 465 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 180 |
Conread position: | 183-810 |
Cow position: | chr17:14216898-14217530 (view UCSC Genome Browser custom track) |
Alignm length: | 636 |
Alignm identity: | 463 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 181 |
Conread position: | 184-812 |
Cow position: | chr17:8209230-8208603 (view UCSC Genome Browser custom track) |
Alignm length: | 636 |
Alignm identity: | 471 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 38, 179 |
Conread position: | 185-811 |
Cow position: | chr17:6001895-6002520 (view UCSC Genome Browser custom track) |
Alignm length: | 642 |
Alignm identity: | 425 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 104 |
Conread position: | 188-295 |
Cow position: | chr17:602803-602694 (view UCSC Genome Browser custom track) |
Alignm length: | 110 |
Alignm identity: | 89 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 34, 0 |
Conread position: | 188-561 |
Cow position: | chr17:2556242-2555867 (view UCSC Genome Browser custom track) |
Alignm length: | 380 |
Alignm identity: | 294 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 116 |
Conread position: | 191-812 |
Cow position: | chr17:16859451-16860077 (view UCSC Genome Browser custom track) |
Alignm length: | 641 |
Alignm identity: | 448 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 191, 37 |
Conread position: | 194-322 |
Cow position: | chr17:36987557-36987687 (view UCSC Genome Browser custom track) |
Alignm length: | 131 |
Alignm identity: | 105 |
Alignm E-value: | 6e-27 |
Alignm gaps (pig, cow): | 28, 0 |
Conread position: | 196-721 |
Cow position: | chr17:20183119-20183642 (view UCSC Genome Browser custom track) |
Alignm length: | 533 |
Alignm identity: | 398 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 26, 159 |
Conread position: | 199-707 |
Cow position: | chr17:4287187-4286694 (view UCSC Genome Browser custom track) |
Alignm length: | 515 |
Alignm identity: | 317 |
Alignm E-value: | 6e-27 |
Alignm gaps (pig, cow): | 112, 15 |
Conread position: | 200-810 |
Cow position: | chr17:250047-249423 (view UCSC Genome Browser custom track) |
Alignm length: | 646 |
Alignm identity: | 457 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 143 |
Conread position: | 201-782 |
Cow position: | chr17:22429387-22429959 (view UCSC Genome Browser custom track) |
Alignm length: | 589 |
Alignm identity: | 438 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 88 |
Conread position: | 212-385 |
Cow position: | chr17:26205711-26205886 (view UCSC Genome Browser custom track) |
Alignm length: | 177 |
Alignm identity: | 134 |
Alignm E-value: | 1e-30 |
Alignm gaps (pig, cow): | 10, 147 |
Conread position: | 230-454 |
Cow position: | chr17:39933731-39933511 (view UCSC Genome Browser custom track) |
Alignm length: | 228 |
Alignm identity: | 163 |
Alignm E-value: | 3e-29 |
Alignm gaps (pig, cow): | 91, 57 |
Conread position: | 245-810 |
Cow position: | chr17:24781109-24780542 (view UCSC Genome Browser custom track) |
Alignm length: | 571 |
Alignm identity: | 419 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 136, 116 |
Conread position: | 263-811 |
Cow position: | chr17:14308270-14308812 (view UCSC Genome Browser custom track) |
Alignm length: | 559 |
Alignm identity: | 354 |
Alignm E-value: | 3e-40 |
Alignm gaps (pig, cow): | 119, 85 |
Conread position: | 267-456 |
Cow position: | chr17:31199611-31199792 (view UCSC Genome Browser custom track) |
Alignm length: | 192 |
Alignm identity: | 149 |
Alignm E-value: | 3e-31 |
Alignm gaps (pig, cow): | 115, 28 |
Conread position: | 281-810 |
Cow position: | chr17:22160941-22160410 (view UCSC Genome Browser custom track) |
Alignm length: | 536 |
Alignm identity: | 389 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 80 |
Conread position: | 327-812 |
Cow position: | chr17:15322788-15322323 (view UCSC Genome Browser custom track) |
Alignm length: | 488 |
Alignm identity: | 346 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 54, 34 |
Conread position: | 365-812 |
Cow position: | chr17:1283846-1284264 (view UCSC Genome Browser custom track) |
Alignm length: | 450 |
Alignm identity: | 327 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 35 |
Conread position: | 375-812 |
Cow position: | chr17:28110017-28109588 (view UCSC Genome Browser custom track) |
Alignm length: | 443 |
Alignm identity: | 320 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 17 |
Conread position: | 407-808 |
Cow position: | chr17:15370972-15370576 (view UCSC Genome Browser custom track) |
Alignm length: | 405 |
Alignm identity: | 286 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 128, 49 |
Conread position: | 409-812 |
Cow position: | chr17:2579455-2579054 (view UCSC Genome Browser custom track) |
Alignm length: | 408 |
Alignm identity: | 295 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 126, 31 |
Conread position: | 429-783 |
Cow position: | chr17:2147079-2146732 (view UCSC Genome Browser custom track) |
Alignm length: | 359 |
Alignm identity: | 240 |
Alignm E-value: | 6e-36 |
Alignm gaps (pig, cow): | 17, 57 |
Conread position: | 430-812 |
Cow position: | chr17:40804270-40803899 (view UCSC Genome Browser custom track) |
Alignm length: | 388 |
Alignm identity: | 281 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 104, 22 |
Conread position: | 476-778 |
Cow position: | chr17:2738209-2737905 (view UCSC Genome Browser custom track) |
Alignm length: | 306 |
Alignm identity: | 219 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 58, 16 |
Conread position: | 476-812 |
Cow position: | chr17:39933514-39933180 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 230 |
Alignm E-value: | 8e-40 |
Alignm gaps (pig, cow): | 58, 98 |
Conread position: | 508-810 |
Cow position: | chr17:11783171-11782865 (view UCSC Genome Browser custom track) |
Alignm length: | 307 |
Alignm identity: | 223 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 0 |
Conread position: | 592-812 |
Cow position: | chr17:32024483-32024703 (view UCSC Genome Browser custom track) |
Alignm length: | 222 |
Alignm identity: | 172 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 129, 52 |
Conread position: | 615-810 |
Cow position: | chr17:6259392-6259198 (view UCSC Genome Browser custom track) |
Alignm length: | 198 |
Alignm identity: | 138 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 17, 52 |
Conread position: | 615-812 |
Cow position: | chr17:22131632-22131433 (view UCSC Genome Browser custom track) |
Alignm length: | 200 |
Alignm identity: | 141 |
Alignm E-value: | 2e-28 |
Alignm gaps (pig, cow): | 106, 0 |
Conread position: | 619-802 |
Cow position: | chr17:20088065-20088253 (view UCSC Genome Browser custom track) |
Alignm length: | 189 |
Alignm identity: | 134 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 14, 0 |
Conread position: | 651-812 |
Cow position: | chr17:6119805-6119643 (view UCSC Genome Browser custom track) |
Alignm length: | 163 |
Alignm identity: | 115 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 70, 0 |
Show alignments to all cow chromosomes.