Cow genome map

Conread name: Tra1-TCH01C040031

Conread position: 175-812
Cow position: chr18:41840484-41841125 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 190

Conread position: 176-279
Cow position: chr18:55504656-55504758 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 86
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 176-385
Cow position: chr18:27987403-27987189 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 164
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 32, 14

Conread position: 176-580
Cow position: chr18:14130724-14130322 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 183

Conread position: 176-812
Cow position: chr18:16176278-16176906 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 40

Conread position: 176-812
Cow position: chr18:27837977-27838601 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 186

Conread position: 176-812
Cow position: chr18:28973563-28974198 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 183

Conread position: 176-812
Cow position: chr18:36508672-36508033 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 187

Conread position: 176-812
Cow position: chr18:40478722-40478085 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 186

Conread position: 177-554
Cow position: chr18:52651258-52650890 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 137

Conread position: 177-788
Cow position: chr18:44601857-44601267 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 17

Conread position: 177-812
Cow position: chr18:14416314-14415679 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 60

Conread position: 177-812
Cow position: chr18:37505402-37504766 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 62

Conread position: 178-306
Cow position: chr18:24700775-24700907 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 21, 0

Conread position: 178-331
Cow position: chr18:56462565-56462720 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 123
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 44, 0

Conread position: 178-358
Cow position: chr18:17992083-17992265 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 145
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 44, 0

Conread position: 178-463
Cow position: chr18:36258018-36258311 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 198
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 52, 31

Conread position: 178-474
Cow position: chr18:16843003-16843295 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 28

Conread position: 178-493
Cow position: chr18:19539247-19539557 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 45

Conread position: 178-505
Cow position: chr18:51462741-51463063 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 81

Conread position: 178-506
Cow position: chr18:24040394-24040723 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 182

Conread position: 178-637
Cow position: chr18:51342024-51341562 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 181

Conread position: 178-648
Cow position: chr18:54044385-54044836 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 60

Conread position: 178-654
Cow position: chr18:16877806-16877345 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 75

Conread position: 178-654
Cow position: chr18:46877671-46878128 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 309
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 52, 136

Conread position: 178-684
Cow position: chr18:29048228-29048740 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 328
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 49, 84

Conread position: 178-684
Cow position: chr18:29237146-29236647 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 128

Conread position: 178-704
Cow position: chr18:53786175-53785649 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 28

Conread position: 178-727
Cow position: chr18:6868921-6869469 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 188

Conread position: 178-728
Cow position: chr18:16534316-16533768 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 181

Conread position: 178-735
Cow position: chr18:37599204-37599749 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 143

Conread position: 178-802
Cow position: chr18:33336199-33335582 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 7

Conread position: 178-807
Cow position: chr18:2019349-2019974 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 18

Conread position: 178-808
Cow position: chr18:23797985-23797355 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 181

Conread position: 178-808
Cow position: chr18:54171526-54172136 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 58

Conread position: 178-810
Cow position: chr18:47742356-47741720 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 185

Conread position: 178-810
Cow position: chr18:55088587-55089223 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 185

Conread position: 178-812
Cow position: chr18:1521483-1520830 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 197

Conread position: 178-812
Cow position: chr18:9186437-9187062 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 25

Conread position: 178-812
Cow position: chr18:23944037-23944671 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 185

Conread position: 178-812
Cow position: chr18:32294096-32293477 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 31

Conread position: 178-812
Cow position: chr18:33269163-33268544 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 179

Conread position: 178-812
Cow position: chr18:33359203-33358565 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 136

Conread position: 178-812
Cow position: chr18:35335817-35335185 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 181

Conread position: 178-812
Cow position: chr18:39748915-39748284 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 31

Conread position: 178-812
Cow position: chr18:43146588-43147225 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 184

Conread position: 178-812
Cow position: chr18:47719246-47719869 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 183

Conread position: 178-812
Cow position: chr18:48222216-48221579 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 77

Conread position: 178-812
Cow position: chr18:51310921-51310287 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 26

Conread position: 178-812
Cow position: chr18:51481177-51480540 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 185

Conread position: 180-611
Cow position: chr18:5980765-5980340 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 286
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 47, 74

Conread position: 180-663
Cow position: chr18:2886686-2887173 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 117

Conread position: 183-750
Cow position: chr18:51689957-51689390 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 176

Conread position: 183-801
Cow position: chr18:19352718-19352093 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 180

Conread position: 183-809
Cow position: chr18:22602820-22602190 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 178

Conread position: 183-809
Cow position: chr18:33953242-33953864 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 64

Conread position: 183-810
Cow position: chr18:16079050-16078405 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 180

Conread position: 184-416
Cow position: chr18:54003852-54003616 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 180
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 41, 54

Conread position: 184-810
Cow position: chr18:11274774-11275386 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 175

Conread position: 185-812
Cow position: chr18:51258314-51257683 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 176

Conread position: 194-532
Cow position: chr18:114711-114378 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 89

Conread position: 196-496
Cow position: chr18:45959036-45958737 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 133
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 31, 117

Conread position: 210-484
Cow position: chr18:32652522-32652251 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 21

Conread position: 212-433
Cow position: chr18:18089172-18089391 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 165
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 169, 18

Conread position: 221-724
Cow position: chr18:16393354-16393850 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 123

Conread position: 232-812
Cow position: chr18:54024078-54024655 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 129

Conread position: 245-507
Cow position: chr18:25350934-25350673 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 195
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 133, 112

Conread position: 247-478
Cow position: chr18:54269860-54269622 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 173
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 9, 111

Conread position: 263-724
Cow position: chr18:43201305-43200855 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 98

Conread position: 315-809
Cow position: chr18:29070443-29069968 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 309
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 77, 34

Conread position: 318-502
Cow position: chr18:8312457-8312276 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 138
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 64, 43

Conread position: 318-809
Cow position: chr18:29900501-29900031 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 316
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 61, 36

Conread position: 328-811
Cow position: chr18:45958870-45958404 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 245
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 195, 161

Conread position: 329-728
Cow position: chr18:48452717-48452317 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 259
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 121, 19

Conread position: 342-641
Cow position: chr18:35288710-35288402 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 220
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 40, 19

Conread position: 350-812
Cow position: chr18:17992401-17992861 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 9

Conread position: 357-810
Cow position: chr18:44621917-44621459 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 43

Conread position: 357-812
Cow position: chr18:16659847-16660304 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 48

Conread position: 398-812
Cow position: chr18:27987144-27986729 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 91

Conread position: 440-635
Cow position: chr18:29763530-29763335 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 137
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 79, 46

Conread position: 451-810
Cow position: chr18:51660481-51660126 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 38

Conread position: 469-652
Cow position: chr18:22869801-22869616 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 143
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 65, 20

Conread position: 474-812
Cow position: chr18:32652036-32651696 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 15

Conread position: 496-789
Cow position: chr18:51464457-51464750 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 207
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 38, 77

Conread position: 496-806
Cow position: chr18:19539855-19540164 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 65

Conread position: 496-812
Cow position: chr18:25350059-25349739 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 76

Conread position: 500-809
Cow position: chr18:37585648-37585960 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 75

Conread position: 549-810
Cow position: chr18:54002456-54002206 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 157
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 171, 79

Conread position: 619-812
Cow position: chr18:14130188-14129995 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 139
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 107, 169

Show alignments to all cow chromosomes.